C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium channel, voltage-dependent, beta 1 subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000067191 CACNB1 9606 - 17:39173456-39197703 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344140 CACNB1-002 39177136-39197703 protein_coding
  ENST00000394303 CACNB1-001 39173456-39197703 protein_coding
  ENST00000394310 CACNB1-004 39177136-39197702 protein_coding
  ENST00000492737 CACNB1-003 39186542-39193824 processed_transcript
  ENST00000536613 CACNB1-012 39186423-39193493 retained_intron
  ENST00000539338 CACNB1-005 39173801-39193883 retained_intron
  ENST00000577582 CACNB1-011 39184325-39187439 processed_transcript
  ENST00000577926 CACNB1-008 39192024-39195269 processed_transcript
  ENST00000582414 CACNB1-010 39191615-39193493 retained_intron
  ENST00000582544 CACNB1-013 39177417-39178270 retained_intron
  ENST00000582877 CACNB1-009 39186542-39195071 processed_transcript
  ENST00000622445 CACNB1-201 39173456-39197703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344140ENST00000394303ENST00000394310ENST00000492737ENST00000536613ENST00000539338ENST00000582544ENST00000582877ENST00000622445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344140 N/A N/A N/A N/A 3.326±2.27 N/A 1.356±0.00 N/A N/A N/A 87.768±77.12 N/A N/A 2.329±0.00
ENST00000394303 N/A N/A N/A 12.979±6.53 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394310 N/A N/A N/A 4.282±0.00 N/A 0.094±0.00 0.059±0.00 N/A 0.628±0.59 0.524±0.37 N/A 0.901±0.47 0.260±0.00 N/A
ENST00000492737 N/A N/A N/A N/A N/A N/A N/A 0.945±0.00 N/A N/A N/A N/A N/A N/A
ENST00000536613 N/A N/A N/A N/A N/A N/A N/A 0.762±0.00 N/A N/A N/A N/A N/A N/A
ENST00000539338 N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A 0.164±0.03 N/A N/A N/A 0.446±0.00
ENST00000582544 N/A N/A N/A N/A N/A N/A 1.214±0.00 1.598±0.00 N/A 2.710±0.00 N/A N/A N/A N/A
ENST00000582877 N/A N/A 1.005±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622445 0.985±0.00 1.240±0.00 0.090±0.00 N/A N/A 2.309±0.00 0.210±0.10 0.484±0.00 0.033±0.00 0.724±0.52 N/A 1.566±0.35 0.612±0.00 1.860±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_0000TK CIL_0000TK_0002 CGP 17:39156894-39197703
CIL_0000TJ CIL_0000TJ_0002 CGP 17:39173456-39204727

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005245 TAS:IEA voltage-gated calcium channel activity
GO:0005515 IEA protein binding
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006612 IEA protein targeting to membrane
GO:0006810 TAS transport
GO:0006816 IEA calcium ion transport
GO:0007411 TAS axon guidance
GO:0008331 IEA high voltage-gated calcium channel activity
GO:0016529 IEA sarcoplasmic reticulum
GO:0030315 IEA T-tubule
GO:0034765 IEA regulation of ion transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002167 cacnb1 calcium channel, voltage-dependent, beta 1 subunit protein_coding Danio_rerio
ENSMUSG00000020882 Cacnb1 calcium channel, voltage-dependent, beta 1 subunit protein_coding Mus_musculus

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