C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium channel, voltage-dependent, beta 1 subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020882 Cacnb1 10090 - 11:98001508-98023034 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017552 Cacnb1-001 98001508-98022634 protein_coding
  ENSMUST00000092736 Cacnb1-002 98004925-98022634 protein_coding
  ENSMUST00000103144 Cacnb1-201 98002901-98022627 protein_coding
  ENSMUST00000107561 Cacnb1-003 98004747-98018372 protein_coding
  ENSMUST00000107562 Cacnb1-004 98004925-98022634 protein_coding
  ENSMUST00000124170 Cacnb1-005 98009660-98012551 processed_transcript
  ENSMUST00000135462 Cacnb1-006 98009625-98023034 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLungMuscleOvaryTestisENSMUST00000017552ENSMUST00000103144ENSMUST00000107561ENSMUST00000107562
Transcript ID Adrenal Brain Breast Colon Lung Muscle Ovary Testis
ENSMUST00000017552 3.483±0.96 24.910±1.84 4.842±1.51 5.888±0.29 4.928±0.68 16.783±0.00 7.443±0.51 19.367±1.65
ENSMUST00000103144 N/A 13.788±0.00 N/A N/A N/A N/A N/A 9.641±0.00
ENSMUST00000107561 N/A N/A 14.942±0.75 N/A N/A 47.355±10.15 N/A N/A
ENSMUST00000107562 N/A N/A N/A N/A N/A N/A N/A 16.926±0.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_0000TK CIL_0000TK_0003 CGP 11:97989578-98023034
CIL_0000TJ CIL_0000TJ_0003 CGP 11:98001508-98030492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006612 IMP protein targeting to membrane
GO:0006816 IMP calcium ion transport
GO:0008331 IGI high voltage-gated calcium channel activity
GO:0016529 IDA sarcoplasmic reticulum
GO:0030315 IDA T-tubule
GO:0034765 IEA regulation of ion transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002167 cacnb1 calcium channel, voltage-dependent, beta 1 subunit protein_coding Danio_rerio
ENSG00000067191 CACNB1 calcium channel, voltage-dependent, beta 1 subunit protein_coding Homo_sapiens

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