C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, beta 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394303 CACNB1-001 ENSG00000067191 9606 - 17:39173456-39197703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000394303
Transcript ID Brain
ENST00000394303 12.979±6.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_0000TK CIL_0000TK_0002 CGP 17:39156894-39197703
CIL_0000TJ CIL_0000TJ_0002 CGP 17:39173456-39204727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 TAS:IEA voltage-gated calcium channel activity
GO:0005515 IEA protein binding
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006612 IEA protein targeting to membrane
GO:0006810 TAS transport
GO:0006816 IEA calcium ion transport
GO:0007411 TAS axon guidance
GO:0008331 IEA high voltage-gated calcium channel activity
GO:0016529 IEA sarcoplasmic reticulum
GO:0030315 IEA T-tubule
GO:0034765 IEA regulation of ion transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017552 Cacnb1-001 protein_coding Mus_musculus 0 3456
ENSMUST00000107562 Cacnb1-004 protein_coding Mus_musculus 0 2037
ENSMUST00000103144 Cacnb1-201 protein_coding Mus_musculus 0 1046
ENSMUST00000092736 Cacnb1-002 protein_coding Mus_musculus 0 1046
ENSMUST00000135462 Cacnb1-006 processed_transcript Mus_musculus 0 985
ENSMUST00000107561 Cacnb1-003 protein_coding Mus_musculus 0 963
ENSMUST00000124170 Cacnb1-005 processed_transcript Mus_musculus 0 381

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