C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intraflagellar transport 80
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000068885 IFT80 9606 - 3:160256986-160399880 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326448 IFT80-001 160256986-160399532 protein_coding
  ENST00000461213 IFT80-025 160303944-160320147 retained_intron
  ENST00000463240 IFT80-027 160258419-160277478 processed_transcript
  ENST00000465537 IFT80-022 160356013-160399207 protein_coding
  ENST00000465972 IFT80-018 160377436-160399216 processed_transcript
  ENST00000466326 IFT80-006 160384601-160399880 processed_transcript
  ENST00000467254 IFT80-011 160383985-160399247 retained_intron
  ENST00000468218 IFT80-015 160366055-160399223 protein_coding
  ENST00000468327 IFT80-021 160377442-160399215 processed_transcript
  ENST00000472555 IFT80-024 160303916-160357499 nonsense_mediated_decay
  ENST00000472773 IFT80-016 160357485-160399223 processed_transcript
  ENST00000475677 IFT80-008 160357485-160399544 protein_coding
  ENST00000477495 IFT80-013 160373492-160399245 processed_transcript
  ENST00000478278 IFT80-028 160258403-160268761 retained_intron
  ENST00000478370 IFT80-014 160366083-160399223 protein_coding
  ENST00000478460 IFT80-017 160319833-160399221 processed_transcript
  ENST00000478536 IFT80-007 160381569-160399544 protein_coding
  ENST00000482317 IFT80-019 160375819-160399216 nonsense_mediated_decay
  ENST00000483325 IFT80-026 160299079-160307781 protein_coding
  ENST00000483465 IFT80-004 160256992-160383656 protein_coding
  ENST00000484963 IFT80-023 160356013-160377454 nonsense_mediated_decay
  ENST00000486856 IFT80-020 160366083-160399216 protein_coding
  ENST00000487943 IFT80-003 160258185-160399209 retained_intron
  ENST00000489004 IFT80-012 160377436-160399247 protein_coding
  ENST00000496589 IFT80-002 160258180-160399273 protein_coding
  ENST00000498145 IFT80-010 160381605-160399520 processed_transcript
  ENST00000498409 IFT80-009 160366053-160399533 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326448ENST00000483465ENST00000487943ENST00000496589
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326448 N/A N/A N/A 2.037±0.00 1.880±0.00 1.266±0.00 0.768±0.00 2.872±0.00 N/A 2.397±0.00 0.258±0.00 2.530±0.00 0.801±0.13 5.419±0.00
ENST00000483465 0.806±0.00 2.077±0.00 N/A 2.583±0.54 N/A N/A 1.035±0.00 N/A 1.202±0.38 N/A N/A 3.601±0.00 N/A N/A
ENST00000487943 N/A N/A N/A 2.131±0.00 N/A N/A 0.998±0.00 N/A 1.890±0.00 5.640±0.00 N/A N/A N/A N/A
ENST00000496589 N/A N/A 1.920±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0002 CGP 3:160256986-160434962

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0002062 IEA chondrocyte differentiation
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IBA centrosome
GO:0005929 IBA cilium
GO:0007224 IEA smoothened signaling pathway
GO:0030992 IBA intraciliary transport particle B
GO:0042384 IBA cilium assembly
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0060271 IEA cilium morphogenesis
GO:0060349 IEA bone morphogenesis
GO:2000051 IEA negative regulation of non-canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038879 ift80 intraflagellar transport 80 homolog (Chlamydomonas) protein_coding Danio_rerio
ENSMUSG00000027778 Ift80 intraflagellar transport 80 protein_coding Mus_musculus

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