C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 80
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000326448 IFT80-001 ENSG00000068885 9606 - 3:160256986-160399532 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000326448
Transcript ID Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000326448 2.037±0.00 1.880±0.00 1.266±0.00 0.768±0.00 2.872±0.00 2.397±0.00 0.258±0.00 2.530±0.00 0.801±0.13 5.419±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0002 CGP 3:160256986-160434962

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0002062 IEA chondrocyte differentiation
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IBA centrosome
GO:0005929 IBA cilium
GO:0007224 IEA smoothened signaling pathway
GO:0030992 IBA intraciliary transport particle B
GO:0042384 IBA cilium assembly
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0060271 IEA cilium morphogenesis
GO:0060349 IEA bone morphogenesis
GO:2000051 IEA negative regulation of non-canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169064 Ift80-202 protein_coding Mus_musculus 0 2880
ENSMUST00000107812 Ift80-001 protein_coding Mus_musculus 0 2880
ENSMUST00000029347 Ift80-201 protein_coding Mus_musculus 0 2787
ENSMUST00000136448 Ift80-002 retained_intron Mus_musculus 0 2743
ENSMUST00000152502 Ift80-003 retained_intron Mus_musculus 0 1633
ENSMUST00000136176 Ift80-004 retained_intron Mus_musculus 0 1184
ENSMUST00000154741 Ift80-006 protein_coding Mus_musculus 0 824
ENSMUST00000148031 Ift80-005 protein_coding Mus_musculus 0 606
ENSMUST00000176135 Ift80-007 processed_transcript Mus_musculus 0 549
ENSMUST00000176754 Ift80-009 processed_transcript Mus_musculus 0 448

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