C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intraflagellar transport 80
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027778 Ift80 10090 - 3:68892499-69004570 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029347 Ift80-201 68892525-68994537 protein_coding
  ENSMUST00000107812 Ift80-001 68892499-69004543 protein_coding
  ENSMUST00000136176 Ift80-004 68893645-68920105 retained_intron
  ENSMUST00000136448 Ift80-002 68892499-69004559 retained_intron
  ENSMUST00000148031 Ift80-005 68967920-69004484 protein_coding
  ENSMUST00000152502 Ift80-003 68917445-69004498 retained_intron
  ENSMUST00000154741 Ift80-006 68963635-69004477 protein_coding
  ENSMUST00000169064 Ift80-202 68892525-69004570 protein_coding
  ENSMUST00000176135 Ift80-007 68973304-69004388 processed_transcript
  ENSMUST00000176189 Ift80-008 68914766-68915115 retained_intron
  ENSMUST00000176754 Ift80-009 68940128-68973745 processed_transcript

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029347ENSMUST00000107812ENSMUST00000136176ENSMUST00000136448ENSMUST00000169064ENSMUST00000176135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029347 N/A 0.640±0.00 N/A 1.003±0.09 0.822±0.00 0.163±0.00 N/A N/A 0.647±0.27 N/A 0.713±0.28 2.512±0.79 0.667±0.10 N/A
ENSMUST00000107812 N/A N/A N/A N/A N/A N/A N/A N/A 1.048±0.22 N/A N/A 0.866±0.03 0.260±0.00 N/A
ENSMUST00000136176 N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 N/A N/A N/A 1.109±0.00 5.126±1.26
ENSMUST00000136448 0.627±0.18 0.926±0.14 0.454±0.00 0.487±0.12 1.000±0.22 0.481±0.20 0.317±0.03 0.472±0.25 0.577±0.34 0.728±0.33 0.068±0.02 0.639±0.19 0.230±0.07 N/A
ENSMUST00000169064 1.301±1.00 0.627±0.04 3.821±0.68 2.993±1.01 1.138±0.38 0.504±0.33 0.675±0.28 2.125±0.53 2.461±2.07 2.342±0.07 0.808±0.19 2.069±0.67 1.459±0.57 12.796±3.61
ENSMUST00000176135 N/A N/A N/A 15.842±0.00 N/A N/A N/A N/A N/A N/A N/A 28.987±0.00 7.273±3.88 105.470±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0003 CGP 3:68892499-69034623

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IGI osteoblast differentiation
GO:0002062 IGI chondrocyte differentiation
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005929 IDA cilium
GO:0007224 IMP smoothened signaling pathway
GO:0030992 IDA intraciliary transport particle B
GO:0036064 ISO ciliary basal body
GO:0042073 IC intraciliary transport
GO:0042384 IMP cilium assembly
GO:0045880 IMP positive regulation of smoothened signaling pathway
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0060271 IMP cilium morphogenesis
GO:0060349 IMP bone morphogenesis
GO:2000051 IGI negative regulation of non-canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038879 ift80 intraflagellar transport 80 homolog (Chlamydomonas) protein_coding Danio_rerio
ENSG00000068885 IFT80 intraflagellar transport 80 protein_coding Homo_sapiens

Loading