C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jumonji domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397625 JMJD6-004 ENSG00000070495 9606 - 17:76718453-76726590 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397625
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397625 8.727±0.00 7.667±0.00 0.992±0.00 4.293±2.63 3.528±2.19 13.915±12.26 4.128±3.30 6.226±4.41 3.663±0.54 40.930±0.00 4.135±1.93 11.253±5.91 13.225±1.11 15.553±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FJ CIL_0000FJ_0001 CGP 17:76672551-76726799
CIL_0003KF CIL_0003KF_0002 CGP 17:76712832-76733936

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002040 ISS sprouting angiogenesis
GO:0003723 TAS RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0005506 IDA iron ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0018395 IDA peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
GO:0033746 IDA histone demethylase activity (H3-R2 specific)
GO:0033749 IDA histone demethylase activity (H4-R3 specific)
GO:0042802 IDA identical protein binding
GO:0048024 IMP regulation of mRNA splicing, via spliceosome
GO:0055114 IEA oxidation-reduction process
GO:0070078 IDA histone H3-R2 demethylation
GO:0070079 IDA histone H4-R3 demethylation
GO:0070815 IDA peptidyl-lysine 5-dioxygenase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047616 Jmjd6-001 protein_coding Mus_musculus 0 1585
ENSMUST00000141735 Jmjd6-007 retained_intron Mus_musculus 0 1277
ENSMUST00000142495 Jmjd6-002 nonsense_mediated_decay Mus_musculus 0 1088
ENSMUST00000130120 Jmjd6-003 retained_intron Mus_musculus 0 1086
ENSMUST00000140513 Jmjd6-005 nonsense_mediated_decay Mus_musculus 0 1068
ENSMUST00000140349 Jmjd6-006 nonsense_mediated_decay Mus_musculus 0 1051
ENSMUST00000124831 Jmjd6-004 protein_coding Mus_musculus 0 363

Loading