C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jumonji domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000445478 JMJD6-001 ENSG00000070495 9606 - 17:76712832-76726679 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000445478
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000445478 0.755±0.00 1.080±0.26 1.329±0.00 1.359±0.00 2.856±2.20 1.859±0.00 0.220±0.00 4.324±3.47 1.481±0.59 0.709±0.00 0.991±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FJ CIL_0000FJ_0001 CGP 17:76672551-76726799
CIL_0003KF CIL_0003KF_0002 CGP 17:76712832-76733936

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IEA blood vessel development
GO:0001822 IEA kidney development
GO:0002040 ISS sprouting angiogenesis
GO:0003723 TAS RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0004872 IEA receptor activity
GO:0005506 IDA iron ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007507 IEA heart development
GO:0008380 IEA RNA splicing
GO:0018395 IDA peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
GO:0030324 IEA lung development
GO:0033077 IEA T cell differentiation in thymus
GO:0033746 IDA histone demethylase activity (H3-R2 specific)
GO:0033749 IDA histone demethylase activity (H4-R3 specific)
GO:0042116 IEA macrophage activation
GO:0042802 IDA identical protein binding
GO:0043277 IEA apoptotic cell clearance
GO:0043654 IEA recognition of apoptotic cell
GO:0048024 IMP regulation of mRNA splicing, via spliceosome
GO:0048821 IEA erythrocyte development
GO:0055114 IEA oxidation-reduction process
GO:0060041 IEA retina development in camera-type eye
GO:0070078 IDA histone H3-R2 demethylation
GO:0070079 IDA histone H4-R3 demethylation
GO:0070815 IDA peptidyl-lysine 5-dioxygenase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047616 Jmjd6-001 protein_coding Mus_musculus 0 1655
ENSMUST00000141735 Jmjd6-007 retained_intron Mus_musculus 0 1277
ENSMUST00000142495 Jmjd6-002 nonsense_mediated_decay Mus_musculus 0 1151
ENSMUST00000130120 Jmjd6-003 retained_intron Mus_musculus 0 1086
ENSMUST00000140513 Jmjd6-005 nonsense_mediated_decay Mus_musculus 0 1068
ENSMUST00000140349 Jmjd6-006 nonsense_mediated_decay Mus_musculus 0 1051
ENSMUST00000124831 Jmjd6-004 protein_coding Mus_musculus 0 363
ENSMUST00000106370 Mettl23-001 protein_coding Mus_musculus 3e-20 106

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