C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000073584 SMARCE1 9606 - 17:40624962-40648508 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264640 SMARCE1-009 40629484-40632348 protein_coding
  ENST00000348513 SMARCE1-001 40624962-40648508 protein_coding
  ENST00000377808 SMARCE1-008 40628779-40647818 protein_coding
  ENST00000400122 SMARCE1-015 40628779-40647818 protein_coding
  ENST00000431889 SMARCE1-012 40628468-40647839 protein_coding
  ENST00000447024 SMARCE1-010 40630160-40632290 protein_coding
  ENST00000469334 SMARCE1-003 40628480-40647813 retained_intron
  ENST00000474246 SMARCE1-006 40640574-40647814 protein_coding
  ENST00000478349 SMARCE1-018 40630827-40647828 protein_coding
  ENST00000481231 SMARCE1-007 40635979-40647831 nonsense_mediated_decay
  ENST00000493660 SMARCE1-004 40634169-40647813 retained_intron
  ENST00000577721 SMARCE1-017 40635957-40647818 protein_coding
  ENST00000578044 SMARCE1-014 40628779-40647818 protein_coding
  ENST00000578112 SMARCE1-011 40627707-40647841 nonsense_mediated_decay
  ENST00000578995 SMARCE1-020 40635941-40637731 retained_intron
  ENST00000580419 SMARCE1-013 40628779-40647818 protein_coding
  ENST00000580654 SMARCE1-016 40635957-40647818 protein_coding
  ENST00000582955 SMARCE1-019 40636085-40647641 protein_coding
  ENST00000583294 SMARCE1-021 40636064-40636831 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264640ENST00000348513ENST00000431889ENST00000447024ENST00000478349ENST00000577721ENST00000578044ENST00000578112ENST00000580419ENST00000580654
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.029±0.00 N/A N/A N/A
ENST00000348513 N/A N/A 0.889±0.00 4.038±0.00 N/A 1.162±0.00 N/A N/A N/A N/A 0.581±0.00 5.589±0.00 N/A 3.091±0.00
ENST00000431889 12.146±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.775±0.00 N/A
ENST00000447024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 58.568±0.00 36.953±0.00 36.725±0.00
ENST00000478349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.442±0.00 27.526±0.00 34.804±0.00
ENST00000577721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.345±0.00 N/A N/A N/A
ENST00000578044 N/A N/A N/A 4.897±0.00 N/A N/A N/A N/A N/A N/A 2.662±0.00 N/A N/A 24.805±0.00
ENST00000578112 17.658±0.00 43.901±0.00 3.192±0.00 11.603±0.00 16.836±12.57 17.726±14.21 6.992±5.45 28.641±0.00 8.321±0.78 9.909±3.62 6.182±5.27 21.462±11.32 12.419±3.46 23.509±0.00
ENST00000580419 13.613±0.00 N/A 2.962±0.00 N/A 4.561±0.00 3.771±0.00 1.668±0.00 8.264±0.00 12.046±1.11 10.146±2.96 11.210±0.00 27.396±18.52 20.312±8.76 22.743±0.00
ENST00000580654 N/A N/A N/A N/A 14.316±0.00 13.155±0.00 8.921±0.00 25.618±0.00 N/A N/A N/A 32.777±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QY CIL_0005QY_0001 CGP 17:40553769-40648508
CIL_0004QH CIL_0004QH_0001 CGP 17:40624962-40665141

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 TAS nuclear chromosome
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003682 TAS chromatin binding
GO:0003713 NAS transcription coactivator activity
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0008080 IDA N-acetyltransferase activity
GO:0008152 IDA metabolic process
GO:0016514 IDA SWI/SNF complex
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0017053 IPI transcriptional repressor complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0047485 IPI protein N-terminus binding
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016871 smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein_coding Danio_rerio
ENSMUSG00000037935 Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein_coding Mus_musculus

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