C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004QH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000073584-ENSG00000264058 CGP 9606 17:40624962-40665141
GeneTranscriptPositionBiotype
ENSG00000073584 (SMARCE1)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 		ENST00000264640 (SMARCE1-009) 40629484-40632348 protein_coding
ENST00000348513 (SMARCE1-001) 40624962-40648508 protein_coding
ENST00000377808 (SMARCE1-008) 40628779-40647818 protein_coding
ENST00000400122 (SMARCE1-015) 40628779-40647818 protein_coding
ENST00000431889 (SMARCE1-012) 40628468-40647839 protein_coding
ENST00000447024 (SMARCE1-010) 40630160-40632290 protein_coding
ENST00000469334 (SMARCE1-003) 40628480-40647813 retained_intron
ENST00000474246 (SMARCE1-006) 40640574-40647814 protein_coding
ENST00000478349 (SMARCE1-018) 40630827-40647828 protein_coding
ENST00000481231 (SMARCE1-007) 40635979-40647831 nonsense_mediated_decay
ENST00000493660 (SMARCE1-004) 40634169-40647813 retained_intron
ENST00000577721 (SMARCE1-017) 40635957-40647818 protein_coding
ENST00000578044 (SMARCE1-014) 40628779-40647818 protein_coding
ENST00000578112 (SMARCE1-011) 40627707-40647841 nonsense_mediated_decay
ENST00000578995 (SMARCE1-020) 40635941-40637731 retained_intron
ENST00000580419 (SMARCE1-013) 40628779-40647818 protein_coding
ENST00000580654 (SMARCE1-016) 40635957-40647818 protein_coding
ENST00000582955 (SMARCE1-019) 40636085-40647641 protein_coding
ENST00000583294 (SMARCE1-021) 40636064-40636831 retained_intron
ENSG00000213424 (KRT222)
keratin 222 		ENST00000394049 (KRT222-002) 40654665-40665156 nonsense_mediated_decay
ENST00000394052 (KRT222-001) 40655620-40665141 protein_coding
ENST00000580719 (KRT222-004) 40660158-40665181 nonsense_mediated_decay
ENST00000581564 (KRT222-003) 40657209-40665145 nonsense_mediated_decay
CIL_0004QH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037935-ENSMUSG00000035849 CGP 10090 11:99209047-99244085
GeneTranscriptPositionBiotype
ENSMUSG00000035849 (Krt222)
keratin 222 		ENSMUST00000038214 (Krt222-002) 99233890-99244085 protein_coding
ENSMUST00000103132 (Krt222-001) 99232761-99244067 protein_coding
ENSMUST00000154622 (Krt222-003) 99234943-99238875 processed_transcript
ENSMUSG00000037935 (Smarce1)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 		ENSMUST00000103133 (Smarce1-001) 99209047-99231017 protein_coding
ENSMUST00000128215 (Smarce1-002) 99225299-99230446 processed_transcript
ENSMUST00000128707 (Smarce1-004) 99219709-99230413 processed_transcript
ENSMUST00000135040 (Smarce1-003) 99219629-99230445 processed_transcript
ENSMUST00000155062 (Smarce1-005) 99219220-99220831 processed_transcript
ENSMUST00000156160 (Smarce1-006) 99209992-99213443 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004QH_0001ENSG00000073584ENST00000264640ENST00000348513ENST00000377808ENST00000400122ENST00000431889ENST00000447024ENST00000469334ENST00000474246ENST00000478349ENST00000481231ENST00000493660ENST00000577721ENST00000578044ENST00000578112ENST00000578995ENST00000580419ENST00000580654ENST00000582955ENST00000583294ENSG00000213424ENST00000394049ENST00000394052ENST00000580719ENST00000581564CIL_0004QH_0002ENSMUSG00000035849ENSMUST00000038214ENSMUST00000103132ENSMUST00000154622ENSMUSG00000037935ENSMUST00000103133ENSMUST00000128215ENSMUST00000128707ENSMUST00000135040ENSMUST00000155062ENSMUST00000156160
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004QH_0001ENSG00000073584ENST00000264640ENST00000348513ENST00000431889ENST00000447024ENST00000478349ENST00000577721ENST00000578044ENST00000578112ENST00000580419ENST00000580654ENSG00000213424ENST00000394049ENST00000394052CIL_0004QH_0002ENSMUSG00000035849ENSMUST00000038214ENSMUST00000103132ENSMUST00000154622ENSMUSG00000037935ENSMUST00000103133ENSMUST00000128215ENSMUST00000135040ENSMUST00000156160
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000073584 ENST00000264640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.029±0.00 N/A N/A N/A
ENST00000348513 N/A N/A 0.889±0.00 4.038±0.00 N/A 1.162±0.00 N/A N/A N/A N/A 0.581±0.00 5.589±0.00 N/A 3.091±0.00
ENST00000377808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000400122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431889 12.146±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.775±0.00 N/A
ENST00000447024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 58.568±0.00 36.953±0.00 36.725±0.00
ENST00000469334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.442±0.00 27.526±0.00 34.804±0.00
ENST00000481231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.345±0.00 N/A N/A N/A
ENST00000578044 N/A N/A N/A 4.897±0.00 N/A N/A N/A N/A N/A N/A 2.662±0.00 N/A N/A 24.805±0.00
ENST00000578112 17.658±0.00 43.901±0.00 3.192±0.00 11.603±0.00 16.836±12.57 17.726±14.21 6.992±5.45 28.641±0.00 8.321±0.78 9.909±3.62 6.182±5.27 21.462±11.32 12.419±3.46 23.509±0.00
ENST00000578995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580419 13.613±0.00 N/A 2.962±0.00 N/A 4.561±0.00 3.771±0.00 1.668±0.00 8.264±0.00 12.046±1.11 10.146±2.96 11.210±0.00 27.396±18.52 20.312±8.76 22.743±0.00
ENST00000580654 N/A N/A N/A N/A 14.316±0.00 13.155±0.00 8.921±0.00 25.618±0.00 N/A N/A N/A 32.777±0.00 N/A N/A
ENST00000582955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213424 ENST00000394049 N/A N/A N/A 3.767±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394052 N/A N/A N/A 7.456±1.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035849 ENSMUST00000038214 0.323±0.24 0.086±0.03 0.061±0.00 4.400±0.00 0.321±0.09 0.110±0.05 N/A 0.106±0.03 0.037±0.01 N/A 0.309±0.12 0.134±0.05 0.052±0.01 0.066±0.05
ENSMUST00000103132 0.197±0.09 0.159±0.06 0.123±0.06 1.926±1.48 0.161±0.09 0.114±0.02 3.416±0.30 0.235±0.10 0.032±0.02 0.166±0.01 0.479±0.22 0.141±0.06 0.035±0.01 0.038±0.02
ENSMUST00000154622 0.249±0.00 0.167±0.00 N/A 10.045±0.00 N/A 0.141±0.08 N/A N/A N/A 0.206±0.03 N/A 0.236±0.19 N/A 0.068±0.00
ENSMUSG00000037935 ENSMUST00000103133 11.748±5.98 5.309±0.75 9.472±1.60 21.269±13.00 6.601±0.26 7.123±1.38 8.491±1.99 8.896±0.74 9.145±5.61 8.824±2.54 9.839±1.27 13.939±3.61 17.451±4.99 7.682±1.54
ENSMUST00000128215 N/A N/A N/A N/A N/A N/A 0.950±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135040 N/A 6.658±0.00 N/A N/A N/A 8.149±0.00 N/A N/A 5.944±0.00 8.955±0.00 N/A N/A N/A N/A
ENSMUST00000155062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156160 N/A N/A N/A N/A N/A N/A N/A N/A 30.866±20.20 N/A N/A N/A 20.121±0.00 N/A

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