C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348513 SMARCE1-001 ENSG00000073584 9606 - 17:40624962-40648508 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonMuscleOvaryTestisENST00000348513
Transcript ID Bladder Brain Colon Muscle Ovary Testis
ENST00000348513 0.889±0.00 4.038±0.00 1.162±0.00 0.581±0.00 5.589±0.00 3.091±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QY CIL_0005QY_0001 CGP 17:40553769-40648508
CIL_0004QH CIL_0004QH_0001 CGP 17:40624962-40665141

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 TAS nuclear chromosome
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003682 TAS chromatin binding
GO:0003713 NAS transcription coactivator activity
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0008080 IDA N-acetyltransferase activity
GO:0008152 IDA metabolic process
GO:0016514 IDA SWI/SNF complex
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0017053 IPI transcriptional repressor complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0047485 IPI protein N-terminus binding
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103133 Smarce1-001 protein_coding Mus_musculus 0 2093
ENSMUST00000180067 Gm1815-201 processed_pseudogene Mus_musculus 0 1430
ENSMUST00000116179 Gm11864-001 processed_pseudogene Mus_musculus 0 1242
ENSMUST00000178171 Gm8494-201 processed_pseudogene Mus_musculus 0 1208
ENSDART00000121981 smarce1-001 protein_coding Danio_rerio 0 660
ENSDART00000011319 smarce1-201 protein_coding Danio_rerio 0 614
ENSMUST00000155062 Smarce1-005 processed_transcript Mus_musculus 0 610
ENSMUST00000156160 Smarce1-006 processed_transcript Mus_musculus 0 547
ENSMUST00000135040 Smarce1-003 processed_transcript Mus_musculus 0 433
ENSMUST00000128215 Smarce1-002 processed_transcript Mus_musculus 0 239
ENSMUST00000128707 Smarce1-004 processed_transcript Mus_musculus 0 193
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000008 58
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000008 58

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