C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578112 SMARCE1-011 ENSG00000073584 9606 - 17:40627707-40647841 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000578112
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000578112 17.658±0.00 43.901±0.00 3.192±0.00 11.603±0.00 16.836±12.57 17.726±14.21 6.992±5.45 28.641±0.00 8.321±0.78 9.909±3.62 6.182±5.27 21.462±11.32 12.419±3.46 23.509±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QY CIL_0005QY_0001 CGP 17:40553769-40648508
CIL_0004QH CIL_0004QH_0001 CGP 17:40624962-40665141

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103133 Smarce1-001 protein_coding Mus_musculus 0 1764
ENSMUST00000180067 Gm1815-201 processed_pseudogene Mus_musculus 0 1430
ENSMUST00000178171 Gm8494-201 processed_pseudogene Mus_musculus 0 1208
ENSDART00000121981 smarce1-001 protein_coding Danio_rerio 0 638
ENSMUST00000155062 Smarce1-005 processed_transcript Mus_musculus 0 610
ENSDART00000011319 smarce1-201 protein_coding Danio_rerio 0 593
ENSMUST00000156160 Smarce1-006 processed_transcript Mus_musculus 0 547
ENSMUST00000135040 Smarce1-003 processed_transcript Mus_musculus 0 331
ENSMUST00000128707 Smarce1-004 processed_transcript Mus_musculus 0 193
ENSMUST00000128215 Smarce1-002 processed_transcript Mus_musculus 3e-36 158

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