C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037935 Smarce1 10090 - 11:99209047-99231017 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103133 Smarce1-001 99209047-99231017 protein_coding
  ENSMUST00000128215 Smarce1-002 99225299-99230446 processed_transcript
  ENSMUST00000128707 Smarce1-004 99219709-99230413 processed_transcript
  ENSMUST00000135040 Smarce1-003 99219629-99230445 processed_transcript
  ENSMUST00000155062 Smarce1-005 99219220-99220831 processed_transcript
  ENSMUST00000156160 Smarce1-006 99209992-99213443 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103133ENSMUST00000128215ENSMUST00000135040ENSMUST00000156160
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103133 11.748±5.98 5.309±0.75 9.472±1.60 21.269±13.00 6.601±0.26 7.123±1.38 8.491±1.99 8.896±0.74 9.145±5.61 8.824±2.54 9.839±1.27 13.939±3.61 17.451±4.99 7.682±1.54
ENSMUST00000128215 N/A N/A N/A N/A N/A N/A 0.950±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135040 N/A 6.658±0.00 N/A N/A N/A 8.149±0.00 N/A N/A 5.944±0.00 8.955±0.00 N/A N/A N/A N/A
ENSMUST00000156160 N/A N/A N/A N/A N/A N/A N/A N/A 30.866±20.20 N/A N/A N/A 20.121±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QY CIL_0005QY_0002 CGP 11:99144196-99231017
CIL_0004QH CIL_0004QH_0002 CGP 11:99209047-99244085

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0007399 IEA nervous system development
GO:0008080 IEA N-acetyltransferase activity
GO:0008152 IEA metabolic process
GO:0016514 IDA SWI/SNF complex
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0017053 IEA transcriptional repressor complex
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0047485 IEA protein N-terminus binding
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016871 smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein_coding Danio_rerio
ENSG00000073584 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein_coding Homo_sapiens

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