C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343483 HOXA9-001 ENSG00000078399 9606 - 7:27162435-27165530 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverMusclePlacentaTestisENST00000343483
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Muscle Placenta Testis
ENST00000343483 3.169±0.00 0.717±0.00 2.712±0.00 3.199±1.78 10.255±0.00 0.764±0.00 2.744±1.69 1.517±0.00 0.602±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PA CIL_0003PA_0001 CGP 7:27153716-27175180
CIL_0006I0 CIL_0006I0_0002 CGP 7:27162435-27180013

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007338 IEA single fertilization
GO:0008584 IEA male gonad development
GO:0009952 IEA anterior/posterior pattern specification
GO:0009954 IEA proximal/distal pattern formation
GO:0010468 IEA regulation of gene expression
GO:0019899 IPI enzyme binding
GO:0030879 IEA mammary gland development
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0042118 IMP endothelial cell activation
GO:0043565 IEA sequence-specific DNA binding
GO:0045638 ISS negative regulation of myeloid cell differentiation
GO:0048706 IEA embryonic skeletal system development
GO:0060065 IEA uterus development
GO:0060216 IEA definitive hemopoiesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048680 Hoxa9-001 protein_coding Mus_musculus 0 2276
ENSMUST00000154641 Hoxa9-004 processed_transcript Mus_musculus 0 684
ENSMUST00000114425 Hoxa9-002 protein_coding Mus_musculus 0 579
ENSMUST00000156540 Hoxa9-003 processed_transcript Mus_musculus 0 385
ENSDART00000153363 protein_coding Danio_rerio 0.000000000002 79
ENSMUST00000001709 Hoxc5-001 protein_coding Mus_musculus 0.0000000001 73
ENSMUST00000174869 Hoxc5-002 processed_transcript Mus_musculus 0.0000000001 73
ENSDART00000057730 dbx2-201 protein_coding Danio_rerio 0.00000002 66

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