C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoblastoma-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000080839 RBL1 9606 - 20:36996349-37095995 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344359 RBL1-002 37003574-37095989 protein_coding
  ENST00000373664 RBL1-001 36996349-37095995 protein_coding
  ENST00000525052 RBL1-004 37056160-37068055 protein_coding
  ENST00000527999 RBL1-003 37068087-37095995 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344359ENST00000373664ENST00000525052
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344359 0.600±0.00 N/A 0.514±0.00 0.504±0.00 1.797±0.00 0.704±0.06 0.673±0.00 N/A 1.217±0.00 1.972±0.00 N/A 3.445±0.00 0.529±0.00 N/A
ENST00000373664 N/A 0.168±0.00 0.048±0.00 0.360±0.00 0.542±0.06 0.103±0.00 0.687±0.00 0.499±0.08 0.099±0.00 0.376±0.05 1.593±0.00 1.536±0.74 0.648±0.28 1.110±0.70
ENST00000525052 N/A N/A 0.355±0.00 N/A 4.505±0.00 N/A N/A 0.821±0.00 1.670±0.00 N/A 1.096±0.00 6.175±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZW CIL_0004ZW_0001 CGP 20:36890229-37095995
CIL_0004XV CIL_0004XV_0001 CGP 20:36996349-37179588

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0006351 TAS transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007049 IEA cell cycle
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008134 IPI transcription factor binding
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016568 IEA chromatin modification
GO:0043550 IDA regulation of lipid kinase activity
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0051726 IEA regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008141 rbl1 retinoblastoma-like 1 (p107) protein_coding Danio_rerio
ENSMUSG00000027641 Rbl1 retinoblastoma-like 1 (p107) protein_coding Mus_musculus

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