C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344359 RBL1-002 ENSG00000080839 9606 - 20:37003574-37095989 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungOvaryPlacentaENST00000344359
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta
ENST00000344359 0.600±0.00 0.514±0.00 0.504±0.00 1.797±0.00 0.704±0.06 0.673±0.00 1.217±0.00 1.972±0.00 3.445±0.00 0.529±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZW CIL_0004ZW_0001 CGP 20:36890229-37095995
CIL_0004XV CIL_0004XV_0001 CGP 20:36996349-37179588

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008134 IPI transcription factor binding
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016568 IEA chromatin modification
GO:0043550 IDA regulation of lipid kinase activity
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0051726 IEA regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029170 Rbl1-001 protein_coding Mus_musculus 0 3448
ENSMUST00000154721 Rbl1-003 retained_intron Mus_musculus 0 2743
ENSMUST00000124518 Rbl1-002 retained_intron Mus_musculus 0 2187

Loading