C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373664 RBL1-001 ENSG00000080839 9606 - 20:36996349-37095995 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373664
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373664 0.168±0.00 0.048±0.00 0.360±0.00 0.542±0.06 0.103±0.00 0.687±0.00 0.499±0.08 0.099±0.00 0.376±0.05 1.593±0.00 1.536±0.74 0.648±0.28 1.110±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZW CIL_0004ZW_0001 CGP 20:36890229-37095995
CIL_0004XV CIL_0004XV_0001 CGP 20:36996349-37179588

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008134 IPI transcription factor binding
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016568 IEA chromatin modification
GO:0043550 IDA regulation of lipid kinase activity
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0051726 IEA regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029170 Rbl1-001 protein_coding Mus_musculus 0 3679
ENSMUST00000154721 Rbl1-003 retained_intron Mus_musculus 0 2752
ENSMUST00000124518 Rbl1-002 retained_intron Mus_musculus 0 2196

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