C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoblastoma-like 1 (p107)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027641 Rbl1 10090 - 2:157145893-157204534 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029170 Rbl1-001 157145893-157204512 protein_coding
  ENSMUST00000124518 Rbl1-002 157174986-157204526 retained_intron
  ENSMUST00000141296 Rbl1-004 157188263-157192383 retained_intron
  ENSMUST00000154721 Rbl1-003 157166978-157204534 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029170ENSMUST00000124518ENSMUST00000154721
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029170 2.905±1.28 1.928±0.28 2.267±0.12 4.875±0.17 3.041±1.29 5.469±1.05 0.496±0.08 1.952±0.32 5.497±5.68 3.722±0.69 0.326±0.13 3.966±1.28 3.672±1.41 4.610±1.93
ENSMUST00000124518 N/A 1.458±0.25 N/A 0.246±0.00 1.704±0.00 2.616±0.48 N/A N/A N/A 1.054±0.00 0.209±0.06 1.728±0.63 N/A 2.252±0.00
ENSMUST00000154721 0.470±0.00 N/A N/A 0.056±0.00 0.508±0.00 1.628±0.00 0.178±0.00 0.592±0.00 N/A N/A 0.325±0.00 1.312±0.29 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZW CIL_0004ZW_0002 CGP 2:157097533-157204534
CIL_0004XV CIL_0004XV_0002 CGP 2:157145893-157279549

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008134 IEA transcription factor binding
GO:0016568 IEA chromatin modification
GO:0043550 IEA regulation of lipid kinase activity
GO:0051726 IEA regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008141 rbl1 retinoblastoma-like 1 (p107) protein_coding Danio_rerio
ENSG00000080839 RBL1 retinoblastoma-like 1 protein_coding Homo_sapiens

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