C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 7, type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397968 CDH7-001 ENSG00000081138 9606 + 18:65750921-65890341 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397968
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397968 0.010±0.00 0.009±0.00 0.004±0.00 0.313±0.01 0.005±0.00 0.008±0.00 0.004±0.00 0.005±0.00 0.004±0.00 0.006±0.00 0.001±0.00 0.004±0.00 0.007±0.00 0.044±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076K CIL_00076K_0001 CGP 18:63969925-65890341
CIL_0005QJ CIL_0005QJ_0001 CGP 18:65750252-66604138

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016337 NAS single organismal cell-cell adhesion
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172005 Cdh7-202 protein_coding Mus_musculus 0 3253
ENSMUST00000027542 Cdh7-201 protein_coding Mus_musculus 0 3253
ENSMUST00000112701 Cdh7-001 protein_coding Mus_musculus 0 3253
ENSMUST00000131464 Cdh7-005 nonsense_mediated_decay Mus_musculus 0 2737
ENSMUST00000134301 Cdh7-007 protein_coding Mus_musculus 0 566
ENSMUST00000026432 Cdh9-001 protein_coding Mus_musculus 1.4013e-45 191

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