C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 7, type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536984 CDH7-003 ENSG00000081138 9606 + 18:65750653-65864125 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000536984
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000536984 0.014±0.00 0.109±0.00 0.041±0.00 0.011±0.00 0.019±0.00 0.037±0.00 0.012±0.00 0.046±0.00 0.006±0.00 0.011±0.00 0.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076K CIL_00076K_0001 CGP 18:63969925-65890341
CIL_0005QJ CIL_0005QJ_0001 CGP 18:65750252-66604138

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172005 Cdh7-202 protein_coding Mus_musculus 0 2590
ENSMUST00000027542 Cdh7-201 protein_coding Mus_musculus 0 2590
ENSMUST00000112701 Cdh7-001 protein_coding Mus_musculus 0 2590
ENSMUST00000131464 Cdh7-005 nonsense_mediated_decay Mus_musculus 0 2074
ENSMUST00000134301 Cdh7-007 protein_coding Mus_musculus 0 566
ENSMUST00000026432 Cdh9-001 protein_coding Mus_musculus 0 191

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