C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slingshot protein phosphatase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000551165 SSH1-002 ENSG00000084112 9606 - 12:108791919-108857590 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverLungMuscleOvaryENST00000551165
Transcript ID Brain Heart Kidney Liver Lung Muscle Ovary
ENST00000551165 1.232±0.00 0.677±0.00 1.153±0.00 2.219±0.00 2.032±0.00 3.277±0.00 2.333±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GO CIL_0001GO_0002 CGP 12:108645109-108857590
CIL_0001VP CIL_0001VP_0001 CGP 12:108778192-108901043

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IMP cell morphogenesis
GO:0003677 IEA DNA binding
GO:0003779 IDA actin binding
GO:0004721 IDA phosphoprotein phosphatase activity
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0006470 IMP:IEA protein dephosphorylation
GO:0008064 IBA regulation of actin polymerization or depolymerization
GO:0008138 IBA:IEA protein tyrosine/serine/threonine phosphatase activity
GO:0010591 IBA regulation of lamellipodium assembly
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0030036 IMP actin cytoskeleton organization
GO:0032268 IDA regulation of cellular protein metabolic process
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0042995 IEA cell projection
GO:0050770 IBA regulation of axonogenesis
GO:0071318 IDA cellular response to ATP

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159592 Ssh1-001 protein_coding Mus_musculus 0 1748
ENSMUST00000077689 Ssh1-003 protein_coding Mus_musculus 0 1657
ENSMUST00000112298 Ssh1-002 protein_coding Mus_musculus 0 1081
ENSMUST00000162322 Ssh1-006 retained_intron Mus_musculus 0 377
ENSMUST00000159510 Ssh1-004 nonsense_mediated_decay Mus_musculus 0 261
ENSDART00000113436 ssh2b-201 protein_coding Danio_rerio 0 248
ENSDART00000137444 ssh2b-001 protein_coding Danio_rerio 0 248
ENSMUST00000162396 Ssh1-005 protein_coding Mus_musculus 0 209

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