C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphatidylglycerophosphate synthase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000087157 PGS1 9606 + 17:78378640-78425114 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262764 PGS1-001 78378640-78424554 protein_coding
  ENST00000585521 PGS1-009 78378697-78419596 processed_transcript
  ENST00000586019 PGS1-010 78403835-78419862 protein_coding
  ENST00000586325 PGS1-015 78378649-78396385 processed_transcript
  ENST00000586355 PGS1-011 78403964-78419927 protein_coding
  ENST00000586510 PGS1-016 78378649-78398268 nonsense_mediated_decay
  ENST00000586880 PGS1-013 78420222-78425114 processed_transcript
  ENST00000587356 PGS1-014 78378678-78400854 protein_coding
  ENST00000588169 PGS1-005 78378662-78424141 nonsense_mediated_decay
  ENST00000588281 PGS1-007 78399289-78424557 processed_transcript
  ENST00000589425 PGS1-002 78378649-78424554 nonsense_mediated_decay
  ENST00000589426 PGS1-004 78378657-78424554 nonsense_mediated_decay
  ENST00000589689 PGS1-003 78378651-78403918 protein_coding
  ENST00000591996 PGS1-008 78400831-78421911 retained_intron
  ENST00000592043 PGS1-006 78378670-78403679 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000262764ENST00000585521ENST00000587356ENST00000588169ENST00000588281ENST00000589425ENST00000589426ENST00000591996ENST00000592043
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000262764 N/A N/A N/A N/A N/A 2.237±0.00 N/A 1.295±0.00 N/A N/A 5.399±2.01 6.602±0.60
ENST00000585521 N/A N/A N/A N/A N/A N/A 1.116±0.00 N/A N/A 1.728±0.00 N/A 5.101±0.00
ENST00000587356 N/A N/A N/A 4.129±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.171±0.00
ENST00000588281 3.178±0.00 N/A N/A N/A N/A N/A N/A 0.858±0.00 11.991±0.00 N/A 3.369±0.27 3.757±0.00
ENST00000589425 N/A 3.785±0.00 N/A 2.692±0.00 N/A N/A 5.504±0.00 0.570±0.00 N/A N/A N/A N/A
ENST00000589426 N/A 4.250±0.00 N/A N/A N/A 0.982±0.00 3.813±0.00 N/A N/A 2.010±0.00 3.984±0.00 2.275±0.00
ENST00000591996 N/A 3.554±0.00 1.042±0.00 0.986±0.33 N/A 0.238±0.00 N/A 0.616±0.29 3.549±0.00 0.659±0.00 2.267±0.51 1.529±0.46
ENST00000592043 N/A N/A 3.525±0.00 N/A 3.172±0.64 0.735±0.00 N/A 1.682±0.00 N/A 1.908±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0001 VISTA 17:77940736-78544976
CIL_0003UD CIL_0003UD_0002 CGP 17:78356778-78425114
CIL_00062Y CIL_00062Y_0001 CGP 17:78378640-78577394

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005509 ISS calcium ion binding
GO:0005524 IEA ATP binding
GO:0005739 ISS mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0005783 IDA endoplasmic reticulum
GO:0006644 TAS phospholipid metabolic process
GO:0006655 ISS phosphatidylglycerol biosynthetic process
GO:0008152 IEA metabolic process
GO:0008444 ISS CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0008654 IEA phospholipid biosynthetic process
GO:0016780 IEA phosphotransferase activity, for other substituted phosphate groups
GO:0032049 ISS cardiolipin biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046339 ISS diacylglycerol metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075857 PGS1 (1 of 2) phosphatidylglycerophosphate synthase 1 protein_coding Danio_rerio
ENSDARG00000091534 PGS1 (2 of 2) phosphatidylglycerophosphate synthase 1 protein_coding Danio_rerio
ENSMUSG00000017715 Pgs1 phosphatidylglycerophosphate synthase 1 protein_coding Mus_musculus

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