C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylglycerophosphate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592043 PGS1-006 ENSG00000087157 9606 + 17:78378670-78403679 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverMuscleENST00000592043
Transcript ID Brain Colon Heart Liver Muscle
ENST00000592043 3.525±0.00 3.172±0.64 0.735±0.00 1.682±0.00 1.908±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0001 VISTA 17:77940736-78544976
CIL_0003UD CIL_0003UD_0002 CGP 17:78356778-78425114
CIL_00062Y CIL_00062Y_0001 CGP 17:78378640-78577394

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0008152 IEA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000132676 Pgs1-001 protein_coding Mus_musculus 0 1170
ENSMUST00000017859 Pgs1-004 nonsense_mediated_decay Mus_musculus 0 1168
ENSMUST00000100185 Pgs1-003 nonsense_mediated_decay Mus_musculus 0 669

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