C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylglycerophosphate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000589426 PGS1-004 ENSG00000087157 9606 + 17:78378657-78424554 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartKidneyMuscleOvaryPlacentaENST00000589426
Transcript ID Adrenal Heart Kidney Muscle Ovary Placenta
ENST00000589426 4.250±0.00 0.982±0.00 3.813±0.00 2.010±0.00 3.984±0.00 2.275±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0001 VISTA 17:77940736-78544976
CIL_0003UD CIL_0003UD_0002 CGP 17:78356778-78425114
CIL_00062Y CIL_00062Y_0001 CGP 17:78378640-78577394

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005509 ISS calcium ion binding
GO:0005524 IEA ATP binding
GO:0005739 ISS mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0005783 IDA endoplasmic reticulum
GO:0006644 TAS phospholipid metabolic process
GO:0006655 ISS phosphatidylglycerol biosynthetic process
GO:0008152 IEA metabolic process
GO:0008444 ISS CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0008654 IEA phospholipid biosynthetic process
GO:0016780 IEA phosphotransferase activity, for other substituted phosphate groups
GO:0032049 ISS cardiolipin biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046339 ISS diacylglycerol metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017859 Pgs1-004 nonsense_mediated_decay Mus_musculus 0 1522
ENSMUST00000100185 Pgs1-003 nonsense_mediated_decay Mus_musculus 0 1520
ENSMUST00000132676 Pgs1-001 protein_coding Mus_musculus 0 1147

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