C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264728 TMEM40-004 ENSG00000088726 9606 - 3:12734707-12769457 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264728
Transcript ID Adipose Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264728 0.139±0.00 0.562±0.00 0.259±0.00 0.054±0.00 0.966±0.00 0.087±0.00 1.167±0.37 12.438±0.00 0.132±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SC CIL_0005SC_0001 CGP 3:12583601-12769457
CIL_0005SD CIL_0005SD_0001 CGP 3:12733525-12871916

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166254 Tmem40-203 protein_coding Mus_musculus 0 448
ENSMUST00000072933 Tmem40-201 protein_coding Mus_musculus 0 444
ENSMUST00000112946 Tmem40-001 protein_coding Mus_musculus 0 444
ENSMUST00000170625 Tmem40-204 protein_coding Mus_musculus 0 414
ENSMUST00000164303 Tmem40-202 protein_coding Mus_musculus 0 394
ENSMUST00000178558 Tmem40-205 protein_coding Mus_musculus 0 394
ENSMUST00000151849 Tmem40-003 retained_intron Mus_musculus 0 394
ENSMUST00000127728 Tmem40-002 protein_coding Mus_musculus 0 394

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