C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000435218 TMEM40-003 ENSG00000088726 9606 - 3:12733916-12759259 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000435218
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000435218 0.169±0.00 0.066±0.00 0.034±0.00 0.163±0.00 0.110±0.08 0.242±0.20 0.822±0.51 0.044±0.00 0.675±0.66 5.390±0.65 0.112±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SC CIL_0005SC_0001 CGP 3:12583601-12769457
CIL_0005SD CIL_0005SD_0001 CGP 3:12733525-12871916

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170625 Tmem40-204 protein_coding Mus_musculus 0 481
ENSMUST00000166254 Tmem40-203 protein_coding Mus_musculus 0 416
ENSMUST00000072933 Tmem40-201 protein_coding Mus_musculus 0 416
ENSMUST00000112946 Tmem40-001 protein_coding Mus_musculus 0 416
ENSMUST00000164303 Tmem40-202 protein_coding Mus_musculus 0 396
ENSMUST00000178558 Tmem40-205 protein_coding Mus_musculus 0 396
ENSMUST00000127728 Tmem40-002 protein_coding Mus_musculus 0 396
ENSMUST00000151849 Tmem40-003 retained_intron Mus_musculus 0 394
ENSMUST00000106107 Rab40b-001 protein_coding Mus_musculus 0.00003 55

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