C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000485124 TMEM40-008 ENSG00000088726 9606 - 3:12737518-12739209 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverOvaryTestisENST00000485124
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Ovary Testis
ENST00000485124 0.271±0.00 0.543±0.00 0.144±0.00 0.154±0.00 0.204±0.13 0.130±0.00 0.241±0.00 0.177±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SC CIL_0005SC_0001 CGP 3:12583601-12769457
CIL_0005SD CIL_0005SD_0001 CGP 3:12733525-12871916

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178558 Tmem40-205 protein_coding Mus_musculus 3e-32 143
ENSMUST00000151849 Tmem40-003 retained_intron Mus_musculus 3e-32 143
ENSMUST00000166254 Tmem40-203 protein_coding Mus_musculus 4e-26 122
ENSMUST00000170625 Tmem40-204 protein_coding Mus_musculus 4e-26 122
ENSMUST00000164303 Tmem40-202 protein_coding Mus_musculus 4e-26 122
ENSMUST00000072933 Tmem40-201 protein_coding Mus_musculus 4e-26 122
ENSMUST00000127728 Tmem40-002 protein_coding Mus_musculus 4e-26 122
ENSMUST00000112946 Tmem40-001 protein_coding Mus_musculus 4e-26 122

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