C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, C3HC-type containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000091732 ZC3HC1 9606 - 7:130018286-130051451 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311873 ZC3HC1-201 130018287-130051451 protein_coding
  ENST00000358303 ZC3HC1-001 130018286-130051451 protein_coding
  ENST00000360708 ZC3HC1-002 130018292-130051374 protein_coding
  ENST00000467642 ZC3HC1-003 130018293-130051374 nonsense_mediated_decay
  ENST00000470651 ZC3HC1-007 130039507-130051377 nonsense_mediated_decay
  ENST00000471022 ZC3HC1-009 130023677-130051369 retained_intron
  ENST00000477578 ZC3HC1-005 130023564-130039626 retained_intron
  ENST00000480193 ZC3HC1-010 130039275-130051369 protein_coding
  ENST00000481503 ZC3HC1-004 130018326-130051389 protein_coding
  ENST00000483827 ZC3HC1-006 130026236-130051374 nonsense_mediated_decay
  ENST00000484432 ZC3HC1-008 130039519-130051385 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311873ENST00000358303ENST00000360708ENST00000467642ENST00000471022ENST00000477578ENST00000480193ENST00000481503ENST00000484432
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311873 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.192±0.00 N/A N/A N/A N/A
ENST00000358303 1.211±0.00 3.762±0.00 N/A 2.632±0.00 3.493±0.00 0.396±0.00 4.593±0.00 2.276±0.00 2.459±0.00 N/A 3.787±2.68 4.153±2.53 1.570±0.67 8.599±3.11
ENST00000360708 N/A N/A N/A N/A 0.309±0.00 N/A 0.563±0.00 1.579±1.17 N/A N/A N/A 0.659±0.00 N/A N/A
ENST00000467642 0.555±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471022 N/A N/A 0.369±0.00 N/A 0.674±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477578 N/A N/A 1.006±0.00 N/A N/A N/A N/A N/A N/A N/A 1.307±0.00 N/A N/A N/A
ENST00000480193 N/A N/A N/A 2.030±0.00 N/A N/A 0.703±0.00 N/A 1.702±0.00 N/A 3.944±0.00 0.379±0.00 N/A N/A
ENST00000481503 N/A 1.956±0.00 N/A 0.330±0.00 3.661±0.00 0.710±0.05 1.082±0.00 N/A 1.117±0.81 1.142±0.12 0.605±0.00 3.314±0.00 2.449±1.05 N/A
ENST00000484432 N/A N/A 1.074±0.00 N/A 1.139±0.00 0.817±0.00 N/A N/A N/A 1.195±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DZ CIL_0004DZ_0001 CGP 7:129830732-130051451
CIL_0004E3 CIL_0004E3_0001 CGP 7:130018286-130135720

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0007067 IEA mitotic nuclear division
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0019901 IPI protein kinase binding
GO:0031965 IDA nuclear membrane
GO:2001240 IEA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062651 zc3hc1 zinc finger, C3HC-type containing 1 protein_coding Danio_rerio
ENSMUSG00000039130 Zc3hc1 zinc finger, C3HC type 1 protein_coding Mus_musculus

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