C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, C3HC type 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039130 Zc3hc1 10090 - 6:30366380-30391028 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000080812 Zc3hc1-002 30366380-30391023 protein_coding
  ENSMUST00000102992 Zc3hc1-001 30366388-30391028 protein_coding
  ENSMUST00000115184 Zc3hc1-003 30366474-30391010 protein_coding
  ENSMUST00000126945 Zc3hc1-008 30374823-30382668 processed_transcript
  ENSMUST00000129796 Zc3hc1-006 30387345-30391014 nonsense_mediated_decay
  ENSMUST00000136255 Zc3hc1-010 30372922-30391006 nonsense_mediated_decay
  ENSMUST00000138983 Zc3hc1-009 30370268-30372980 retained_intron
  ENSMUST00000147990 Zc3hc1-005 30376003-30390989 nonsense_mediated_decay
  ENSMUST00000152101 Zc3hc1-007 30384779-30391010 retained_intron
  ENSMUST00000152391 Zc3hc1-004 30366384-30391002 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080812ENSMUST00000102992ENSMUST00000115184ENSMUST00000136255ENSMUST00000138983ENSMUST00000152101ENSMUST00000152391
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080812 6.824±0.75 3.205±0.98 6.421±0.68 14.967±2.14 4.457±1.21 2.288±0.61 5.234±0.48 4.371±0.66 7.143±4.41 4.882±0.61 6.993±0.46 7.388±3.31 8.105±4.79 6.700±2.49
ENSMUST00000102992 N/A 2.859±0.00 N/A N/A N/A 0.758±0.00 N/A N/A N/A N/A N/A 3.150±0.00 N/A N/A
ENSMUST00000115184 N/A N/A N/A N/A 2.929±0.00 N/A N/A N/A N/A N/A N/A N/A 1.097±0.00 N/A
ENSMUST00000136255 N/A N/A N/A 3.744±0.00 N/A 1.867±0.00 N/A 2.979±0.00 N/A N/A N/A 2.817±0.29 2.789±0.59 1.206±0.00
ENSMUST00000138983 N/A 4.577±1.05 N/A N/A 4.376±0.81 2.549±0.00 N/A N/A N/A 4.664±0.00 N/A 7.013±2.23 N/A N/A
ENSMUST00000152101 N/A N/A N/A 0.275±0.00 0.418±0.00 N/A N/A N/A N/A N/A N/A 0.487±0.00 N/A 0.184±0.00
ENSMUST00000152391 N/A N/A N/A 5.166±0.00 N/A 0.560±0.00 N/A N/A N/A N/A N/A 2.765±0.00 3.033±0.48 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DZ CIL_0004DZ_0002 CGP 6:30211289-30391028
CIL_0008PP CIL_0008PP_0002 VISTA 6:30335908-30937352
CIL_0004E3 CIL_0004E3_0002 CGP 6:30366380-30455179

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007067 IEA mitotic nuclear division
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0019901 IEA protein kinase binding
GO:0031965 IEA nuclear membrane
GO:2001240 IDA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062651 zc3hc1 zinc finger, C3HC-type containing 1 protein_coding Danio_rerio
ENSG00000091732 ZC3HC1 zinc finger, C3HC-type containing 1 protein_coding Homo_sapiens

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