C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transglutaminase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092295 TGM1 9606 - 14:24249114-24264432 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000206765 TGM1-001 24249114-24263210 protein_coding
  ENST00000544573 TGM1-002 24249208-24263180 protein_coding
  ENST00000558074 TGM1-008 24261798-24263538 protein_coding
  ENST00000559136 TGM1-009 24255454-24260158 protein_coding
  ENST00000559669 TGM1-010 24254123-24255056 protein_coding
  ENST00000560226 TGM1-007 24262227-24263540 protein_coding
  ENST00000560443 TGM1-005 24262159-24264264 protein_coding
  ENST00000560478 TGM1-006 24262202-24264238 protein_coding
  ENST00000561067 TGM1-004 24262325-24264432 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000206765ENST00000544573ENST00000558074ENST00000559136ENST00000559669ENST00000560478
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000206765 0.071±0.00 N/A 0.056±0.00 N/A 0.204±0.00 0.071±0.00 0.063±0.02 0.776±0.00 N/A N/A N/A 21.863±15.23 0.594±0.00 0.743±0.00
ENST00000544573 0.037±0.00 0.169±0.00 0.549±0.00 0.217±0.08 N/A 0.206±0.00 0.049±0.00 0.625±0.00 0.040±0.00 0.348±0.00 0.013±0.00 11.631±9.17 1.035±0.00 0.409±0.00
ENST00000558074 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.867±0.00 N/A 7.434±0.00 N/A N/A
ENST00000559136 0.227±0.00 N/A N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A N/A N/A N/A N/A
ENST00000559669 N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A
ENST00000560478 N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SE CIL_0001SE_0001 CGP 14:24239643-24264432
CIL_0001SH CIL_0001SH_0001 CGP 14:24249114-24271739

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001533 TAS cornified envelope
GO:0003810 IEA:IDA protein-glutamine gamma-glutamyltransferase activity
GO:0005515 IPI protein binding
GO:0005913 IEA cell-cell adherens junction
GO:0006464 NAS cellular protein modification process
GO:0009887 IEA organ morphogenesis
GO:0018149 IEA peptide cross-linking
GO:0030216 IDA keratinocyte differentiation
GO:0031224 IDA intrinsic component of membrane
GO:0031424 IEA keratinization
GO:0043163 TAS cell envelope organization
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005913 TGM1 (1 of 6) transglutaminase 1 protein_coding Danio_rerio
ENSDARG00000012130 tgm1l1 transglutaminase 1 like 1 protein_coding Danio_rerio
ENSDARG00000017799 tgm1 transglutaminase 1, K polypeptide protein_coding Danio_rerio
ENSDARG00000019024 tgm1l2 transglutaminase 1 like 2 protein_coding Danio_rerio
ENSDARG00000040569 tgm1l4 transglutaminase 1 like 4 protein_coding Danio_rerio
ENSDARG00000044084 TGM1 (6 of 6) transglutaminase 1 protein_coding Danio_rerio
ENSMUSG00000022218 Tgm1 transglutaminase 1, K polypeptide protein_coding Mus_musculus

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