C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transglutaminase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000206765 TGM1-001 ENSG00000092295 9606 - 14:24249114-24263210 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyOvaryPlacentaTestisENST00000206765
Transcript ID Adipose Bladder Breast Colon Heart Kidney Ovary Placenta Testis
ENST00000206765 0.071±0.00 0.056±0.00 0.204±0.00 0.071±0.00 0.063±0.02 0.776±0.00 21.863±15.23 0.594±0.00 0.743±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SE CIL_0001SE_0001 CGP 14:24239643-24264432
CIL_0001SH CIL_0001SH_0001 CGP 14:24249114-24271739

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001533 TAS cornified envelope
GO:0003810 IEA:IDA protein-glutamine gamma-glutamyltransferase activity
GO:0005515 IPI protein binding
GO:0005913 IEA cell-cell adherens junction
GO:0006464 NAS cellular protein modification process
GO:0009887 IEA organ morphogenesis
GO:0018149 IEA peptide cross-linking
GO:0030216 IDA keratinocyte differentiation
GO:0031224 IDA intrinsic component of membrane
GO:0031424 IEA keratinization
GO:0043163 TAS cell envelope organization
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178034 Tgm1-203 protein_coding Mus_musculus 0 2676
ENSMUST00000002389 Tgm1-201 protein_coding Mus_musculus 0 2639
ENSMUST00000168729 Tgm1-202 protein_coding Mus_musculus 0 2638

Loading