C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001SH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000092295-ENSG00000100949 CGP 9606 14:24249114-24271739
GeneTranscriptPositionBiotype
ENSG00000092295 (TGM1)
transglutaminase 1 		ENST00000206765 (TGM1-001) 24249114-24263210 protein_coding
ENST00000544573 (TGM1-002) 24249208-24263180 protein_coding
ENST00000558074 (TGM1-008) 24261798-24263538 protein_coding
ENST00000559136 (TGM1-009) 24255454-24260158 protein_coding
ENST00000559669 (TGM1-010) 24254123-24255056 protein_coding
ENST00000560226 (TGM1-007) 24262227-24263540 protein_coding
ENST00000560443 (TGM1-005) 24262159-24264264 protein_coding
ENST00000560478 (TGM1-006) 24262202-24264238 protein_coding
ENST00000561067 (TGM1-004) 24262325-24264432 protein_coding
ENSG00000100949 (RABGGTA)
Rab geranylgeranyltransferase, alpha subunit 		ENST00000216840 (RABGGTA-002) 24265538-24271739 protein_coding
ENST00000399409 (RABGGTA-003) 24265538-24271599 protein_coding
ENST00000543002 (RABGGTA-006) 24267904-24271183 retained_intron
ENST00000558376 (RABGGTA-001) 24265557-24271549 nonsense_mediated_decay
ENST00000558534 (RABGGTA-016) 24269288-24271583 processed_transcript
ENST00000558649 (RABGGTA-013) 24266605-24268386 retained_intron
ENST00000558936 (RABGGTA-018) 24269346-24270444 retained_intron
ENST00000558954 (RABGGTA-020) 24269660-24271597 processed_transcript
ENST00000559551 (RABGGTA-007) 24265552-24271556 retained_intron
ENST00000559586 (RABGGTA-017) 24269374-24271611 processed_transcript
ENST00000559850 (RABGGTA-014) 24266786-24268182 retained_intron
ENST00000559974 (RABGGTA-008) 24265556-24271549 nonsense_mediated_decay
ENST00000560127 (RABGGTA-019) 24269629-24271538 nonsense_mediated_decay
ENST00000560163 (RABGGTA-021) 24269955-24271516 processed_transcript
ENST00000560207 (RABGGTA-022) 24270349-24271404 retained_intron
ENST00000560243 (RABGGTA-010) 24265542-24268164 nonsense_mediated_decay
ENST00000560521 (RABGGTA-009) 24265538-24268163 protein_coding
ENST00000560777 (RABGGTA-012) 24265568-24270001 protein_coding
ENST00000560871 (RABGGTA-015) 24266817-24269149 processed_transcript
ENST00000560998 (RABGGTA-005) 24265570-24271510 retained_intron
ENST00000561055 (RABGGTA-011) 24265538-24267708 retained_intron
CIL_0001SH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022218-ENSMUSG00000040472 CGP 10090 14:55700009-55722257
GeneTranscriptPositionBiotype
ENSMUSG00000022218 (Tgm1)
transglutaminase 1, K polypeptide 		ENSMUST00000002389 (Tgm1-201) 55700009-55713088 protein_coding
ENSMUST00000168729 (Tgm1-202) 55700009-55713492 protein_coding
ENSMUST00000178034 (Tgm1-203) 55700009-55713492 protein_coding
ENSMUSG00000040472 (Rabggta)
Rab geranylgeranyl transferase, a subunit 		ENSMUST00000062861 (Rabggta-201) 55715873-55722198 protein_coding
ENSMUST00000163889 (Rabggta-202) 55716325-55722257 protein_coding
ENSMUST00000169237 (Rabggta-203) 55715877-55722176 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001SH_0001ENSG00000092295ENST00000206765ENST00000544573ENST00000558074ENST00000559136ENST00000559669ENST00000560478ENSG00000100949ENST00000216840ENST00000399409ENST00000543002ENST00000558376ENST00000558936ENST00000559551ENST00000559586ENST00000559974ENST00000560243ENST00000560521ENST00000560871ENST00000560998ENST00000561055CIL_0001SH_0002ENSMUSG00000022218ENSMUST00000002389ENSMUST00000168729ENSMUST00000178034ENSMUSG00000040472ENSMUST00000062861ENSMUST00000163889ENSMUST00000169237
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000092295 ENST00000206765 0.071±0.00 N/A 0.056±0.00 N/A 0.204±0.00 0.071±0.00 0.063±0.02 0.776±0.00 N/A N/A N/A 21.863±15.23 0.594±0.00 0.743±0.00
ENST00000544573 0.037±0.00 0.169±0.00 0.549±0.00 0.217±0.08 N/A 0.206±0.00 0.049±0.00 0.625±0.00 0.040±0.00 0.348±0.00 0.013±0.00 11.631±9.17 1.035±0.00 0.409±0.00
ENST00000558074 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.867±0.00 N/A 7.434±0.00 N/A N/A
ENST00000559136 0.227±0.00 N/A N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A N/A N/A N/A N/A
ENST00000559669 N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A
ENST00000560226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560478 N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000561067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100949 ENST00000216840 N/A N/A N/A N/A N/A N/A 0.851±0.14 0.109±0.00 0.320±0.00 0.362±0.00 N/A 2.822±1.66 9.322±3.65 N/A
ENST00000399409 3.212±0.00 5.645±0.00 N/A 2.462±2.21 3.127±2.57 2.570±1.57 1.538±1.18 12.800±0.00 1.146±0.99 1.651±1.38 3.977±0.00 4.212±0.78 2.783±0.70 7.103±3.60
ENST00000543002 N/A N/A 0.250±0.00 N/A N/A N/A N/A N/A N/A N/A 0.625±0.00 N/A N/A N/A
ENST00000558376 1.558±0.00 2.637±0.00 0.285±0.00 2.860±1.00 5.937±0.00 N/A 1.722±0.00 N/A 2.774±0.00 0.339±0.00 6.352±0.00 N/A N/A 5.432±0.00
ENST00000558534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558936 N/A N/A N/A N/A N/A N/A N/A 1.585±0.00 N/A N/A 3.040±0.00 N/A N/A N/A
ENST00000558954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559551 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.892±0.00 N/A N/A N/A N/A
ENST00000559586 N/A N/A 0.986±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559974 N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 1.066±0.00 N/A 3.007±0.00 N/A N/A
ENST00000560127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560243 N/A N/A N/A N/A N/A N/A N/A N/A 2.652±0.00 N/A N/A N/A N/A N/A
ENST00000560521 N/A N/A N/A N/A 7.986±0.00 2.319±0.00 N/A N/A N/A N/A 5.579±0.00 N/A N/A N/A
ENST00000560777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560871 N/A 5.328±0.00 N/A N/A N/A N/A N/A N/A N/A 3.569±0.00 N/A 2.423±0.00 N/A 2.873±0.00
ENST00000560998 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.392±0.00 N/A 2.465±0.90 N/A 1.155±0.00
ENST00000561055 N/A N/A N/A N/A N/A N/A N/A 0.450±0.00 N/A 2.949±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022218 ENSMUST00000002389 N/A 0.159±0.02 N/A N/A N/A 0.242±0.00 N/A 1.947±0.31 N/A N/A N/A 0.584±0.24 N/A 0.327±0.00
ENSMUST00000168729 N/A N/A N/A N/A 0.935±0.22 0.069±0.02 N/A N/A 1.367±0.72 N/A N/A N/A N/A 0.245±0.00
ENSMUST00000178034 0.504±0.28 0.182±0.00 0.341±0.05 0.232±0.13 3.506±0.81 0.254±0.13 0.097±0.04 10.709±1.67 7.147±3.86 5.948±4.72 0.099±0.13 0.582±0.27 56.949±20.70 0.069±0.00
ENSMUSG00000040472 ENSMUST00000062861 1.800±0.27 3.893±0.71 2.133±0.52 5.535±0.00 4.997±0.92 4.808±1.04 1.490±0.03 6.311±2.18 3.880±1.53 4.781±0.38 1.620±0.64 4.328±1.18 6.388±1.28 2.422±0.00
ENSMUST00000163889 9.444±1.40 13.404±1.49 5.484±0.62 9.341±3.26 8.925±2.42 12.197±1.95 6.568±1.65 18.585±5.37 12.973±6.29 10.456±0.79 2.728±0.49 12.532±5.74 12.054±5.67 9.515±4.53
ENSMUST00000169237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.022±0.00 N/A N/A N/A

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