C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092421 SEMA6A 9606 - 5:116443616-116574934 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257414 SEMA6A-002 116445750-116574395 protein_coding
  ENST00000343348 SEMA6A-001 116443616-116574934 protein_coding
  ENST00000502996 SEMA6A-011 116486749-116495445 processed_transcript
  ENST00000503402 SEMA6A-012 116482459-116487229 retained_intron
  ENST00000503865 SEMA6A-006 116446464-116449646 protein_coding
  ENST00000503962 SEMA6A-010 116488915-116502677 processed_transcript
  ENST00000506114 SEMA6A-014 116447688-116480279 processed_transcript
  ENST00000509665 SEMA6A-009 116496251-116554896 protein_coding
  ENST00000510024 SEMA6A-013 116486641-116489009 retained_intron
  ENST00000510263 SEMA6A-003 116446613-116536458 protein_coding
  ENST00000512156 SEMA6A-007 116550115-116574234 processed_transcript
  ENST00000513137 SEMA6A-005 116446134-116469544 protein_coding
  ENST00000514316 SEMA6A-015 116478266-116480240 processed_transcript
  ENST00000515009 SEMA6A-008 116491796-116536428 protein_coding
  ENST00000515129 SEMA6A-004 116446134-116478677 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257414ENST00000343348ENST00000509665ENST00000510263ENST00000513137ENST00000514316ENST00000515009ENST00000515129
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257414 N/A N/A N/A 10.167±0.00 N/A N/A N/A N/A 0.824±0.00 4.867±0.00 0.118±0.00 N/A 3.505±0.20 N/A
ENST00000343348 5.349±0.00 5.637±0.00 0.785±0.00 3.872±0.50 2.057±1.57 2.556±0.46 0.482±0.34 0.472±0.14 0.978±0.00 2.290±0.16 0.197±0.00 2.450±0.40 6.431±3.26 0.956±0.21
ENST00000509665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.761±0.00 N/A N/A N/A
ENST00000510263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.093±0.00 N/A N/A
ENST00000513137 N/A N/A 0.999±0.00 N/A 0.993±0.00 3.724±0.00 0.380±0.00 N/A N/A 2.329±0.00 0.382±0.00 N/A N/A N/A
ENST00000514316 N/A N/A 9.538±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515009 N/A N/A N/A N/A 6.236±0.00 N/A N/A N/A N/A 11.803±0.00 N/A 9.896±0.00 24.978±0.00 N/A
ENST00000515129 N/A N/A N/A N/A N/A N/A N/A 1.409±0.00 N/A 5.629±0.00 N/A 7.806±0.00 9.007±5.04 3.574±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L9 CIL_0004L9_0001 CGP 5:116084991-116574934

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001764 IEA neuron migration
GO:0004872 IEA receptor activity
GO:0004888 IEA transmembrane signaling receptor activity
GO:0005515 IEA protein binding
GO:0005887 IEA integral component of plasma membrane
GO:0006915 NAS apoptotic process
GO:0007010 NAS cytoskeleton organization
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0007399 NAS nervous system development
GO:0007411 NAS axon guidance
GO:0009887 NAS organ morphogenesis
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0030215 IEA semaphorin receptor binding
GO:0030424 NAS axon
GO:0051642 IEA centrosome localization
GO:0071526 IEA semaphorin-plexin signaling pathway
GO:2001224 IEA positive regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043028 sema6a sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A protein_coding Danio_rerio
ENSMUSG00000019647 Sema6a sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A protein_coding Mus_musculus

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