C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257414 SEMA6A-002 ENSG00000092421 9606 - 5:116445750-116574395 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungMusclePlacentaENST00000257414
Transcript ID Brain Liver Lung Muscle Placenta
ENST00000257414 10.167±0.00 0.824±0.00 4.867±0.00 0.118±0.00 3.505±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L9 CIL_0004L9_0001 CGP 5:116084991-116574934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IEA neuron migration
GO:0004872 IEA receptor activity
GO:0004888 IEA transmembrane signaling receptor activity
GO:0005515 IEA protein binding
GO:0005887 IEA integral component of plasma membrane
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane
GO:0030215 IEA semaphorin receptor binding
GO:0051642 IEA centrosome localization
GO:0071526 IEA semaphorin-plexin signaling pathway
GO:2001224 IEA positive regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000135790 Sema6a-004 protein_coding Mus_musculus 0 4601
ENSMUST00000141224 Sema6a-005 retained_intron Mus_musculus 0 2575
ENSMUST00000151382 Sema6a-006 retained_intron Mus_musculus 0 2495
ENSMUST00000019791 Sema6a-001 protein_coding Mus_musculus 0 2495
ENSMUST00000076043 Sema6a-003 protein_coding Mus_musculus 0 2492
ENSMUST00000156422 Sema6a-007 protein_coding Mus_musculus 0 2222
ENSMUST00000115449 Sema6a-201 protein_coding Mus_musculus 0 2030
ENSMUST00000126684 Sema6a-008 protein_coding Mus_musculus 0 905
ENSMUST00000144223 Sema6a-009 retained_intron Mus_musculus 0 414

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