C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515129 SEMA6A-004 ENSG00000092421 9606 - 5:116446134-116478677 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLungOvaryPlacentaTestisENST00000515129
Transcript ID Kidney Lung Ovary Placenta Testis
ENST00000515129 1.409±0.00 5.629±0.00 7.806±0.00 9.007±5.04 3.574±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L9 CIL_0004L9_0001 CGP 5:116084991-116574934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076043 Sema6a-003 protein_coding Mus_musculus 0 2383
ENSMUST00000115449 Sema6a-201 protein_coding Mus_musculus 0 1866
ENSMUST00000135790 Sema6a-004 protein_coding Mus_musculus 0 1866
ENSMUST00000019791 Sema6a-001 protein_coding Mus_musculus 0 1866
ENSMUST00000156422 Sema6a-007 protein_coding Mus_musculus 0 1639
ENSMUST00000151382 Sema6a-006 retained_intron Mus_musculus 0 523
ENSMUST00000141224 Sema6a-005 retained_intron Mus_musculus 0 521

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