C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343348 SEMA6A-001 ENSG00000092421 9606 - 5:116443616-116574934 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343348
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343348 5.349±0.00 5.637±0.00 0.785±0.00 3.872±0.50 2.057±1.57 2.556±0.46 0.482±0.34 0.472±0.14 0.978±0.00 2.290±0.16 0.197±0.00 2.450±0.40 6.431±3.26 0.956±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L9 CIL_0004L9_0001 CGP 5:116084991-116574934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI:IEA protein binding
GO:0006915 NAS apoptotic process
GO:0007010 NAS cytoskeleton organization
GO:0007166 NAS cell surface receptor signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0007399 NAS nervous system development
GO:0007411 NAS axon guidance
GO:0009887 NAS organ morphogenesis
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0030424 NAS axon

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019791 Sema6a-001 protein_coding Mus_musculus 0 4558
ENSMUST00000156422 Sema6a-007 protein_coding Mus_musculus 0 4023
ENSMUST00000151382 Sema6a-006 retained_intron Mus_musculus 0 2532
ENSMUST00000141224 Sema6a-005 retained_intron Mus_musculus 0 2531
ENSMUST00000135790 Sema6a-004 protein_coding Mus_musculus 0 2495
ENSMUST00000076043 Sema6a-003 protein_coding Mus_musculus 0 2494
ENSMUST00000115449 Sema6a-201 protein_coding Mus_musculus 0 2361
ENSMUST00000126684 Sema6a-008 protein_coding Mus_musculus 0 905
ENSMUST00000144223 Sema6a-009 retained_intron Mus_musculus 0 414

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