C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox homolog 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000209875 CBX5-002 ENSG00000094916 9606 - 12:54230940-54280102 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000209875
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000209875 6.182±0.00 5.752±0.00 6.394±0.00 12.372±1.52 5.394±1.40 5.591±1.43 3.090±2.52 10.064±0.00 4.150±2.99 5.234±1.25 1.351±0.61 6.675±6.22 4.489±1.61 9.253±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_00003L CIL_00003L_0001 CGP 12:54164745-54280133
CIL_0002TM CIL_0002TM_0002 CGP 12:54230940-54287088

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 ISS histone deacetylase complex
GO:0000776 IEA kinetochore
GO:0000792 IEA heterochromatin
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005635 TAS nuclear envelope
GO:0005654 TAS nucleoplasm
GO:0005720 TAS nuclear heterochromatin
GO:0005730 IDA nucleolus
GO:0007596 TAS blood coagulation
GO:0010369 IEA chromocenter
GO:0016032 IEA viral process
GO:0016605 IMP PML body
GO:0017053 ISS transcriptional repressor complex
GO:0030674 ISS protein binding, bridging
GO:0031618 NAS nuclear pericentric heterochromatin
GO:0035064 IDA methylated histone binding
GO:0035097 ISS histone methyltransferase complex
GO:0042803 IEA protein homodimerization activity
GO:0042826 IEA histone deacetylase binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0070491 ISS repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118152 Cbx5-001 protein_coding Mus_musculus 0 1347
ENSMUST00000108813 Cbx5-002 protein_coding Mus_musculus 0 1288
ENSMUST00000122182 Cbx5-003 protein_coding Mus_musculus 0 1014
ENSMUST00000119518 Gm13005-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 1e-22 115
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 1e-22 115
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 1e-22 115
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 1e-22 115
ENSMUST00000124271 Acin1-019 retained_intron Mus_musculus 0.0000003 64

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