C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox homolog 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550411 CBX5-003 ENSG00000094916 9606 - 12:54241755-54259545 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENST00000550411
Transcript ID Ovary Testis
ENST00000550411 3.288±0.00 31.420±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_00003L CIL_00003L_0001 CGP 12:54164745-54280133
CIL_0002TM CIL_0002TM_0002 CGP 12:54230940-54287088

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 ISS histone deacetylase complex
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005635 TAS nuclear envelope
GO:0005654 TAS nucleoplasm
GO:0005720 TAS nuclear heterochromatin
GO:0005730 IDA nucleolus
GO:0007596 TAS blood coagulation
GO:0016032 IEA viral process
GO:0016605 IMP PML body
GO:0017053 ISS transcriptional repressor complex
GO:0030674 ISS protein binding, bridging
GO:0031618 NAS nuclear pericentric heterochromatin
GO:0035064 IDA methylated histone binding
GO:0035097 ISS histone methyltransferase complex
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0070491 ISS repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122182 Cbx5-003 protein_coding Mus_musculus 0 994
ENSMUST00000108813 Cbx5-002 protein_coding Mus_musculus 0 837
ENSMUST00000118152 Cbx5-001 protein_coding Mus_musculus 0 837
ENSMUST00000119518 Gm13005-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000127191 Cbx5-004 protein_coding Mus_musculus 0 344

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