C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain and PHD finger containing, 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000096070 BRPF3 9606 + 6:36196744-36232790 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339717 BRPF3-003 36196966-36232590 protein_coding
  ENST00000357641 BRPF3-001 36196744-36232790 protein_coding
  ENST00000441123 BRPF3-004 36200406-36232790 nonsense_mediated_decay
  ENST00000441730 BRPF3-005 36211448-36232787 nonsense_mediated_decay
  ENST00000446974 BRPF3-006 36197396-36200608 protein_coding
  ENST00000449261 BRPF3-009 36196966-36232590 nonsense_mediated_decay
  ENST00000454960 BRPF3-007 36197452-36200709 protein_coding
  ENST00000527657 BRPF3-012 36204414-36207348 protein_coding
  ENST00000532330 BRPF3-010 36200297-36231317 nonsense_mediated_decay
  ENST00000532538 BRPF3-013 36211201-36214066 retained_intron
  ENST00000534400 BRPF3-011 36200297-36231317 protein_coding
  ENST00000534694 BRPF3-008 36196966-36232590 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339717ENST00000357641ENST00000441123ENST00000441730ENST00000449261ENST00000527657ENST00000534400ENST00000534694
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339717 2.316±0.00 2.385±0.00 0.841±0.00 3.329±0.00 1.168±0.00 1.779±0.00 0.775±0.42 1.809±0.48 1.292±0.00 N/A 4.280±0.00 2.223±0.00 1.470±0.00 5.827±0.00
ENST00000357641 1.937±0.00 1.171±0.00 2.078±0.00 1.581±0.00 0.590±0.09 2.333±1.55 2.941±0.00 3.039±0.00 0.843±0.00 2.506±0.00 6.004±0.00 4.895±4.42 2.552±0.10 6.316±1.26
ENST00000441123 N/A N/A N/A N/A N/A N/A N/A 0.352±0.00 N/A N/A N/A N/A 0.785±0.00 N/A
ENST00000441730 1.616±0.00 3.230±0.00 N/A 2.182±1.17 1.033±0.00 2.852±0.00 1.607±0.00 3.744±0.00 2.081±0.00 1.917±0.00 4.360±0.00 5.139±2.25 N/A 11.158±3.58
ENST00000449261 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.704±0.00 2.205±0.00 N/A N/A N/A
ENST00000527657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.324±0.00 N/A N/A
ENST00000534400 N/A N/A N/A N/A 1.047±0.32 0.745±0.00 N/A 0.587±0.00 0.482±0.00 0.403±0.00 N/A N/A N/A N/A
ENST00000534694 N/A N/A 1.473±0.00 N/A N/A N/A 0.897±0.00 N/A 0.858±0.10 N/A 0.718±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002O6 CIL_0002O6_0001 CGP 6:36127809-36232790
CIL_0002O9 CIL_0002O9_0001 CGP 6:36196744-36308595

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005829 TAS cytosol
GO:0007596 TAS blood coagulation
GO:0008270 IEA zinc ion binding
GO:0030168 TAS platelet activation
GO:0043966 IDA histone H3 acetylation
GO:0070776 IDA MOZ/MORF histone acetyltransferase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070513 BRPF3 (1 of 2) bromodomain and PHD finger containing, 3 protein_coding Danio_rerio
ENSDARG00000074238 brpf3 bromodomain and PHD finger containing, 3 protein_coding Danio_rerio
ENSMUSG00000063952 Brpf3 bromodomain and PHD finger containing, 3 protein_coding Mus_musculus

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