C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002O9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000096070-ENSG00000180316 CGP 9606 6:36196744-36308595
GeneTranscriptPositionBiotype
ENSG00000096070 (BRPF3)
bromodomain and PHD finger containing, 3 		ENST00000339717 (BRPF3-003) 36196966-36232590 protein_coding
ENST00000357641 (BRPF3-001) 36196744-36232790 protein_coding
ENST00000441123 (BRPF3-004) 36200406-36232790 nonsense_mediated_decay
ENST00000441730 (BRPF3-005) 36211448-36232787 nonsense_mediated_decay
ENST00000446974 (BRPF3-006) 36197396-36200608 protein_coding
ENST00000449261 (BRPF3-009) 36196966-36232590 nonsense_mediated_decay
ENST00000454960 (BRPF3-007) 36197452-36200709 protein_coding
ENST00000527657 (BRPF3-012) 36204414-36207348 protein_coding
ENST00000532330 (BRPF3-010) 36200297-36231317 nonsense_mediated_decay
ENST00000532538 (BRPF3-013) 36211201-36214066 retained_intron
ENST00000534400 (BRPF3-011) 36200297-36231317 protein_coding
ENST00000534694 (BRPF3-008) 36196966-36232590 protein_coding
ENSG00000180316 (PNPLA1)
patatin-like phospholipase domain containing 1 		ENST00000312917 (PNPLA1-003) 36243203-36307754 protein_coding
ENST00000388715 (PNPLA1-002) 36243203-36308595 protein_coding
ENST00000394571 (PNPLA1-004) 36270460-36307716 protein_coding
ENST00000457797 (PNPLA1-001) 36270460-36307716 protein_coding
ENSG00000246982 (RP1-179N16.6)
 ENST00000499560 (RP1-179N16.6-001) 36158068-36197205 antisense
ENST00000526611 (RP1-179N16.6-002) 36146698-36197203 antisense
CIL_0002O9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063952-ENSMUSG00000043286 CGP 10090 17:28801090-28890308
GeneTranscriptPositionBiotype
ENSMUSG00000043286 (Pnpla1)
patatin-like phospholipase domain containing 1 		ENSMUST00000056866 (Pnpla1-201) 28858411-28890308 protein_coding
ENSMUST00000114737 (Pnpla1-001) 28858411-28890308 protein_coding
ENSMUSG00000063952 (Brpf3)
bromodomain and PHD finger containing, 3 		ENSMUST00000004985 (Brpf3-001) 28801090-28838546 protein_coding
ENSMUST00000123942 (Brpf3-005) 28814587-28817798 processed_transcript
ENSMUST00000126868 (Brpf3-006) 28809659-28817174 processed_transcript
ENSMUST00000127007 (Brpf3-007) 28828082-28836791 processed_transcript
ENSMUST00000136233 (Brpf3-008) 28801784-28806308 processed_transcript
ENSMUST00000140587 (Brpf3-009) 28823594-28836736 processed_transcript
ENSMUST00000140973 (Brpf3-004) 28823674-28838541 processed_transcript
ENSMUST00000144022 (Brpf3-003) 28822639-28836698 processed_transcript
ENSMUST00000148149 (Brpf3-010) 28814434-28817560 retained_intron
ENSMUST00000156029 (Brpf3-002) 28810551-28838493 retained_intron
ENSMUSG00000087615 (Pnpla1os)
patatin-like phospholipase domain containing 1, opposite strand 		ENSMUST00000146779 (Pnpla1os-001) 28855136-28859503 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002O9_0001ENSG00000096070ENST00000339717ENST00000357641ENST00000441123ENST00000441730ENST00000446974ENST00000449261ENST00000454960ENST00000527657ENST00000532330ENST00000532538ENST00000534400ENST00000534694ENSG00000180316ENST00000312917ENST00000388715ENST00000394571ENST00000457797ENSG00000246982ENST00000499560ENST00000526611CIL_0002O9_0002ENSMUSG00000043286ENSMUST00000056866ENSMUST00000114737ENSMUSG00000063952ENSMUST00000004985ENSMUST00000123942ENSMUST00000126868ENSMUST00000127007ENSMUST00000136233ENSMUST00000140587ENSMUST00000140973ENSMUST00000144022ENSMUST00000148149ENSMUST00000156029ENSMUSG00000087615ENSMUST00000146779
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002O9_0001ENSG00000096070ENST00000339717ENST00000357641ENST00000441123ENST00000441730ENST00000449261ENST00000527657ENST00000534400ENST00000534694ENSG00000180316ENST00000312917ENST00000388715ENST00000394571ENST00000457797ENSG00000246982ENST00000499560ENST00000526611CIL_0002O9_0002ENSMUSG00000043286ENSMUST00000056866ENSMUST00000114737ENSMUSG00000063952ENSMUST00000004985ENSMUST00000140587ENSMUST00000140973ENSMUST00000156029ENSMUSG00000087615ENSMUST00000146779
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000096070 ENST00000339717 2.316±0.00 2.385±0.00 0.841±0.00 3.329±0.00 1.168±0.00 1.779±0.00 0.775±0.42 1.809±0.48 1.292±0.00 N/A 4.280±0.00 2.223±0.00 1.470±0.00 5.827±0.00
ENST00000357641 1.937±0.00 1.171±0.00 2.078±0.00 1.581±0.00 0.590±0.09 2.333±1.55 2.941±0.00 3.039±0.00 0.843±0.00 2.506±0.00 6.004±0.00 4.895±4.42 2.552±0.10 6.316±1.26
ENST00000441123 N/A N/A N/A N/A N/A N/A N/A 0.352±0.00 N/A N/A N/A N/A 0.785±0.00 N/A
ENST00000441730 1.616±0.00 3.230±0.00 N/A 2.182±1.17 1.033±0.00 2.852±0.00 1.607±0.00 3.744±0.00 2.081±0.00 1.917±0.00 4.360±0.00 5.139±2.25 N/A 11.158±3.58
ENST00000446974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449261 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.704±0.00 2.205±0.00 N/A N/A N/A
ENST00000454960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.324±0.00 N/A N/A
ENST00000532330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534400 N/A N/A N/A N/A 1.047±0.32 0.745±0.00 N/A 0.587±0.00 0.482±0.00 0.403±0.00 N/A N/A N/A N/A
ENST00000534694 N/A N/A 1.473±0.00 N/A N/A N/A 0.897±0.00 N/A 0.858±0.10 N/A 0.718±0.00 N/A N/A N/A
ENSG00000180316 ENST00000312917 N/A N/A 0.322±0.00 N/A N/A 0.070±0.00 N/A 0.037±0.00 N/A N/A N/A 0.160±0.00 N/A 0.146±0.00
ENST00000388715 0.041±0.00 0.134±0.00 0.086±0.00 0.031±0.00 0.087±0.00 0.039±0.00 N/A 0.083±0.00 0.031±0.00 0.143±0.00 0.013±0.00 0.129±0.07 0.028±0.01 0.162±0.03
ENST00000394571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.042±0.00 N/A N/A
ENST00000457797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 0.044±0.02 N/A N/A
ENSG00000246982 ENST00000499560 N/A 0.209±0.00 0.163±0.00 0.288±0.13 0.059±0.03 0.119±0.07 N/A 0.344±0.17 0.094±0.00 0.272±0.17 0.118±0.00 0.328±0.22 0.058±0.00 3.861±2.12
ENST00000526611 0.131±0.00 1.767±0.00 N/A 0.386±0.00 0.255±0.00 0.657±0.00 0.334±0.12 1.200±0.00 0.494±0.00 0.260±0.00 0.274±0.00 0.431±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000043286 ENSMUST00000056866 0.025±0.01 0.041±0.01 0.008±0.00 0.061±0.04 0.060±0.05 0.839±0.36 0.006±0.00 0.062±0.02 0.047±0.05 0.775±0.75 0.003±0.00 0.040±0.03 0.108±0.08 0.516±0.15
ENSMUST00000114737 0.025±0.01 0.039±0.01 0.008±0.00 0.056±0.05 0.024±0.01 N/A 0.006±0.00 0.062±0.02 0.032±0.03 0.088±0.08 0.003±0.00 0.040±0.03 0.048±0.01 N/A
ENSMUSG00000063952 ENSMUST00000004985 8.106±3.03 10.742±2.90 5.395±0.64 5.438±1.05 4.444±0.65 12.172±1.23 1.492±0.52 5.166±0.42 7.471±5.19 4.867±1.75 1.539±0.30 9.182±2.10 15.954±5.95 10.619±2.84
ENSMUST00000123942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.376±0.00
ENSMUST00000140973 7.888±0.00 11.161±1.93 4.115±0.23 3.749±0.40 5.303±1.08 20.237±6.63 1.578±0.00 3.792±0.23 32.338±17.28 3.316±0.77 N/A 5.528±1.84 8.370±1.66 17.807±2.31
ENSMUST00000144022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156029 N/A N/A N/A 1.344±0.00 N/A 4.078±0.69 N/A N/A N/A N/A N/A 2.854±0.17 4.262±1.13 0.969±0.00
ENSMUSG00000087615 ENSMUST00000146779 N/A N/A N/A 0.006±0.00 0.018±0.00 0.249±0.03 N/A N/A 0.003±0.00 N/A N/A N/A 0.044±0.00 0.398±0.23

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