C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain and PHD finger containing, 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534400 BRPF3-011 ENSG00000096070 9606 + 6:36200297-36231317 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverLungENST00000534400
Transcript ID Breast Colon Kidney Liver Lung
ENST00000534400 1.047±0.32 0.745±0.00 0.587±0.00 0.482±0.00 0.403±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002O6 CIL_0002O6_0001 CGP 6:36127809-36232790
CIL_0002O9 CIL_0002O9_0001 CGP 6:36196744-36308595

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004985 Brpf3-001 protein_coding Mus_musculus 0 3640
ENSMUST00000156029 Brpf3-002 retained_intron Mus_musculus 0 1988
ENSMUST00000144022 Brpf3-003 processed_transcript Mus_musculus 0 752
ENSMUST00000140973 Brpf3-004 processed_transcript Mus_musculus 0 684
ENSMUST00000127007 Brpf3-007 processed_transcript Mus_musculus 0 514
ENSMUST00000140587 Brpf3-009 processed_transcript Mus_musculus 0 483
ENSMUST00000126868 Brpf3-006 processed_transcript Mus_musculus 0 466
ENSMUST00000148149 Brpf3-010 retained_intron Mus_musculus 0 420
ENSMUST00000088911 Brd1-003 protein_coding Mus_musculus 0 383
ENSMUST00000109380 Brd1-002 protein_coding Mus_musculus 0 383
ENSMUST00000109381 Brd1-001 protein_coding Mus_musculus 0 383
ENSMUST00000123942 Brpf3-005 processed_transcript Mus_musculus 0 348

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