C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: golgi-associated, gamma adaptin ear containing, ARF binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100083 GGA1 9606 + 22:37608475-37633564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325180 GGA1-024 37608845-37633564 protein_coding
  ENST00000326597 GGA1-018 37612536-37620267 protein_coding
  ENST00000343632 GGA1-001 37608475-37633564 protein_coding
  ENST00000381756 GGA1-002 37608725-37632711 protein_coding
  ENST00000405147 GGA1-007 37608834-37620044 protein_coding
  ENST00000406772 GGA1-003 37609040-37633563 protein_coding
  ENST00000411501 GGA1-008 37608960-37620275 protein_coding
  ENST00000413251 GGA1-015 37613970-37621632 protein_coding
  ENST00000423024 GGA1-019 37614133-37621632 protein_coding
  ENST00000429218 GGA1-010 37608835-37621631 protein_coding
  ENST00000431745 GGA1-011 37609060-37618515 protein_coding
  ENST00000439161 GGA1-009 37608935-37620332 protein_coding
  ENST00000447515 GGA1-017 37609040-37618546 protein_coding
  ENST00000449944 GGA1-016 37608948-37623564 protein_coding
  ENST00000453208 GGA1-012 37608977-37620816 protein_coding
  ENST00000460957 GGA1-022 37630668-37632677 retained_intron
  ENST00000463672 GGA1-023 37629462-37630299 retained_intron
  ENST00000475445 GGA1-006 37623829-37627162 retained_intron
  ENST00000481613 GGA1-021 37620854-37623916 retained_intron
  ENST00000484804 GGA1-013 37609066-37614274 processed_transcript
  ENST00000488672 GGA1-014 37610142-37614195 processed_transcript
  ENST00000489772 GGA1-005 37608830-37618146 retained_intron
  ENST00000491295 GGA1-020 37618403-37620249 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325180ENST00000343632ENST00000381756ENST00000406772ENST00000449944ENST00000460957ENST00000463672ENST00000481613ENST00000489772
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325180 5.773±0.00 6.050±0.00 N/A 2.605±1.97 5.030±0.00 5.754±0.00 1.927±1.66 5.153±4.88 2.016±0.00 5.724±0.00 12.081±0.00 4.042±2.93 4.385±1.35 24.676±3.03
ENST00000343632 1.861±0.00 3.665±0.00 N/A 4.964±0.00 3.294±0.00 N/A 3.470±0.00 7.109±0.00 N/A 2.036±1.41 6.161±0.00 11.525±5.91 2.366±0.36 34.806±0.00
ENST00000381756 5.325±0.00 N/A 1.345±0.00 2.904±2.14 1.008±0.00 1.805±0.00 N/A 1.212±0.00 N/A 1.172±0.00 N/A 8.313±0.00 N/A N/A
ENST00000406772 N/A 3.071±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.929±0.00
ENST00000449944 N/A N/A N/A N/A 2.158±0.00 N/A N/A N/A 1.374±0.00 N/A N/A N/A N/A N/A
ENST00000460957 N/A N/A N/A N/A 4.614±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.162±0.00 N/A N/A N/A
ENST00000481613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.199±0.00 N/A N/A N/A
ENST00000489772 N/A N/A N/A 0.608±0.00 0.856±0.00 2.774±0.00 N/A 1.020±0.00 N/A N/A N/A 1.530±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040E CIL_00040E_0001 CGP 22:37570246-37633564
CIL_00040D CIL_00040D_0001 CGP 22:37608475-37666932

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005768 IEA endosome
GO:0005794 TAS Golgi apparatus
GO:0006886 IEA:TAS intracellular protein transport
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045732 IEA positive regulation of protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038537 gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 protein_coding Danio_rerio
ENSMUSG00000033128 Gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 protein_coding Mus_musculus

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