C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi-associated, gamma adaptin ear containing, ARF binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381756 GGA1-002 ENSG00000100083 9606 + 22:37608725-37632711 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLungOvaryENST00000381756
Transcript ID Adipose Bladder Brain Breast Colon Kidney Lung Ovary
ENST00000381756 5.325±0.00 1.345±0.00 2.904±2.14 1.008±0.00 1.805±0.00 1.212±0.00 1.172±0.00 8.313±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040E CIL_00040E_0001 CGP 22:37570246-37633564
CIL_00040D CIL_00040D_0001 CGP 22:37608475-37666932

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041587 Gga1-201 protein_coding Mus_musculus 0 1980
ENSMUST00000128437 Gga3-006 processed_transcript Mus_musculus 4e-30 137
ENSMUST00000106508 Gga3-002 protein_coding Mus_musculus 4e-30 137
ENSMUST00000019135 Gga3-001 protein_coding Mus_musculus 4e-30 137
ENSMUST00000123485 Gga3-010 processed_transcript Mus_musculus 2e-22 111
ENSMUST00000156173 Gga3-003 nonsense_mediated_decay Mus_musculus 2e-17 95
ENSMUST00000154832 Gga3-011 processed_transcript Mus_musculus 0.0000000004 71

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