C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C and casein kinase substrate in neurons 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263246 PACSIN2-001 ENSG00000100266 9606 - 22:42869771-43015145 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263246
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263246 17.664±0.00 14.291±0.00 4.468±0.00 7.261±6.21 10.231±6.07 17.867±9.60 9.572±7.46 38.832±0.00 5.729±1.72 30.905±0.00 7.752±0.00 29.948±27.74 40.128±11.65 22.526±3.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040L CIL_00040L_0001 CGP 22:42692121-42858106
CIL_0004U5 CIL_0004U5_0001 CGP 22:42796502-43015145
CIL_0008LG CIL_0008LG_0001 VISTA 22:42800321-43401810
CIL_0004LJ CIL_0004LJ_0001 CGP 22:42835412-43089428

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0005856 IEA cytoskeleton
GO:0005901 IDA caveola
GO:0005911 IEA cell-cell junction
GO:0005925 IDA focal adhesion
GO:0008092 IEA cytoskeletal protein binding
GO:0008289 IEA lipid binding
GO:0019898 ISS extrinsic component of membrane
GO:0030036 IEA actin cytoskeleton organization
GO:0031410 IEA cytoplasmic vesicle
GO:0036010 IMP protein localization to endosome
GO:0042802 IPI identical protein binding
GO:0042995 IEA cell projection
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045806 IEA negative regulation of endocytosis
GO:0048858 ISS cell projection morphogenesis
GO:0055038 IDA recycling endosome membrane
GO:0070062 IDA extracellular vesicular exosome
GO:0070300 IDA phosphatidic acid binding
GO:0070836 IEA:IMP caveola assembly
GO:0072584 IMP caveolin-mediated endocytosis
GO:0097320 ISS membrane tubulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165095 Pacsin2-202 protein_coding Mus_musculus 0 1818
ENSMUST00000171436 Pacsin2-203 protein_coding Mus_musculus 0 1818
ENSMUST00000056177 Pacsin2-201 protein_coding Mus_musculus 0 1816
ENSDART00000092415 pacsin2-201 protein_coding Danio_rerio 0 527
ENSDART00000148728 pacsin2-001 protein_coding Danio_rerio 0 527
ENSMUST00000097360 Pacsin1-002 protein_coding Mus_musculus 0 481
ENSMUST00000114872 Pacsin1-004 protein_coding Mus_musculus 0 481
ENSMUST00000045896 Pacsin1-001 protein_coding Mus_musculus 0 481
ENSMUST00000114873 Pacsin1-003 protein_coding Mus_musculus 0 481
ENSDART00000149305 pacsin2-004 protein_coding Danio_rerio 9.99967e-42 176
ENSDART00000150099 pacsin2-002 retained_intron Danio_rerio 3e-28 132
ENSDART00000098296 pacsin3-201 protein_coding Danio_rerio 0.000000008 68

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