C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465618 RPL3-002 ENSG00000100316 9606 - 22:39312884-39320389 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NT CIL_0003NT_0001 CGP 22:39223359-39320389
CIL_0000CB CIL_0000CB_0001 CGP 22:39312882-39385588

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187578 Rpl3-002 retained_intron Mus_musculus 0 1327
ENSMUST00000081650 Rpl3-001 protein_coding Mus_musculus 0 1088
ENSMUST00000117131 Rpl3-ps2-001 processed_pseudogene Mus_musculus 0 1064
ENSMUST00000120557 Rpl3-ps1-001 processed_pseudogene Mus_musculus 0 1057
ENSMUST00000187832 Rpl3-006 nonsense_mediated_decay Mus_musculus 0 1046
ENSMUST00000089501 Gm5879-201 processed_pseudogene Mus_musculus 0 1037
ENSMUST00000118069 Gm12816-001 processed_pseudogene Mus_musculus 0 1014
ENSDART00000011251 rpl3-001 protein_coding Danio_rerio 0 712
ENSMUST00000121389 Gm11662-001 processed_pseudogene Mus_musculus 0 697
ENSMUST00000188025 Rpl3-007 retained_intron Mus_musculus 0 676
ENSMUST00000185330 RP23-267J24.4-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000121173 Gm11765-001 processed_pseudogene Mus_musculus 0 311
ENSDART00000147048 rpl3-002 processed_transcript Danio_rerio 0 209
ENSMUST00000185306 Rpl3-003 protein_coding Mus_musculus 8.00001e-42 176

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