C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401609 RPL3-003 ENSG00000100316 9606 - 22:39312882-39318614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000401609
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000401609 305.567±0.00 857.687±0.00 40.475±0.00 244.450±166.83 391.704±337.85 59.485±52.98 199.690±135.36 211.429±194.75 565.502±503.63 185.012±0.00 1469.379±1290.37 1357.637±297.44 475.124±71.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NT CIL_0003NT_0001 CGP 22:39223359-39320389
CIL_0000CB CIL_0000CB_0001 CGP 22:39312882-39385588

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081650 Rpl3-001 protein_coding Mus_musculus 0 1535
ENSMUST00000120557 Rpl3-ps1-001 processed_pseudogene Mus_musculus 0 1504
ENSMUST00000117131 Rpl3-ps2-001 processed_pseudogene Mus_musculus 0 1491
ENSMUST00000089501 Gm5879-201 processed_pseudogene Mus_musculus 0 1483
ENSMUST00000118069 Gm12816-001 processed_pseudogene Mus_musculus 0 1423
ENSMUST00000187578 Rpl3-002 retained_intron Mus_musculus 0 1088
ENSMUST00000121173 Gm11765-001 processed_pseudogene Mus_musculus 0 1003
ENSMUST00000121389 Gm11662-001 processed_pseudogene Mus_musculus 0 948
ENSDART00000011251 rpl3-001 protein_coding Danio_rerio 0 948
ENSMUST00000188025 Rpl3-007 retained_intron Mus_musculus 0 865
ENSMUST00000185330 RP23-267J24.4-001 processed_pseudogene Mus_musculus 0 822
ENSMUST00000185306 Rpl3-003 protein_coding Mus_musculus 0 625
ENSMUST00000187832 Rpl3-006 nonsense_mediated_decay Mus_musculus 0 361
ENSDART00000147048 rpl3-002 processed_transcript Danio_rerio 0 207

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