C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216146 RPL3-001 ENSG00000100316 9606 - 22:39312884-39319771 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000216146
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000216146 484.396±0.00 354.677±0.00 48.616±0.00 158.802±142.73 214.257±172.20 385.275±320.41 8.084±0.00 205.136±127.99 78.900±0.00 105.404±78.14 30.038±19.70 790.227±710.25 617.393±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NT CIL_0003NT_0001 CGP 22:39223359-39320389
CIL_0000CB CIL_0000CB_0001 CGP 22:39312882-39385588

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071353 IEA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081650 Rpl3-001 protein_coding Mus_musculus 0 1544
ENSMUST00000120557 Rpl3-ps1-001 processed_pseudogene Mus_musculus 0 1509
ENSMUST00000117131 Rpl3-ps2-001 processed_pseudogene Mus_musculus 0 1495
ENSMUST00000089501 Gm5879-201 processed_pseudogene Mus_musculus 0 1487
ENSMUST00000118069 Gm12816-001 processed_pseudogene Mus_musculus 0 1426
ENSMUST00000187578 Rpl3-002 retained_intron Mus_musculus 0 1088
ENSMUST00000121173 Gm11765-001 processed_pseudogene Mus_musculus 0 1003
ENSMUST00000121389 Gm11662-001 processed_pseudogene Mus_musculus 0 952
ENSDART00000011251 rpl3-001 protein_coding Danio_rerio 0 952
ENSMUST00000188025 Rpl3-007 retained_intron Mus_musculus 0 865
ENSMUST00000185330 RP23-267J24.4-001 processed_pseudogene Mus_musculus 0 826
ENSMUST00000185306 Rpl3-003 protein_coding Mus_musculus 0 623
ENSMUST00000187832 Rpl3-006 nonsense_mediated_decay Mus_musculus 0 361
ENSDART00000147048 rpl3-002 processed_transcript Danio_rerio 0 207

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