C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptogyrin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000328933 SYNGR1-001 ENSG00000100321 9606 + 22:39349996-39385588 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328933
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328933 1.132±0.00 2.253±0.00 0.665±0.00 40.297±19.67 1.116±0.59 2.653±2.26 1.230±1.00 1.944±1.93 0.557±0.21 1.271±0.74 0.638±0.21 8.963±9.73 0.978±0.28 7.720±1.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CB CIL_0000CB_0001 CGP 22:39312882-39385588
CIL_0000A3 CIL_0000A3_0001 CGP 22:39349925-39437060

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006605 IEA protein targeting
GO:0008021 IEA synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030672 IEA synaptic vesicle membrane
GO:0048169 ISS regulation of long-term neuronal synaptic plasticity
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009727 Syngr1-001 protein_coding Mus_musculus 0 979
ENSMUST00000009728 Syngr1-002 protein_coding Mus_musculus 0 682
ENSMUST00000143928 Syngr1-003 protein_coding Mus_musculus 0 375
ENSMUST00000135727 Syngr1-004 protein_coding Mus_musculus 0 298

Loading