C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptogyrin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022415 Syngr1 10090 + 15:80091334-80119501 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000009727 Syngr1-001 80091344-80119501 protein_coding
  ENSMUST00000009728 Syngr1-002 80091334-80113441 protein_coding
  ENSMUST00000135727 Syngr1-004 80115473-80116265 protein_coding
  ENSMUST00000143928 Syngr1-003 80097870-80111662 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009727ENSMUST00000009728ENSMUST00000135727ENSMUST00000143928
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009727 0.596±0.10 6.537±0.84 4.889±0.21 27.567±21.80 1.434±0.22 2.360±0.22 2.434±0.20 6.181±0.52 0.271±0.20 2.115±0.12 1.490±0.10 1.980±0.65 1.812±0.84 0.368±0.09
ENSMUST00000009728 12.691±0.75 16.003±6.31 26.184±3.13 N/A 15.694±6.86 2.269±0.40 79.434±9.50 23.117±1.88 4.684±4.93 10.343±3.06 31.300±2.71 10.558±3.75 41.327±14.59 1.983±0.84
ENSMUST00000135727 N/A N/A N/A N/A N/A 5.743±2.43 N/A N/A 0.249±0.00 N/A N/A 8.034±0.81 N/A 0.799±0.07
ENSMUST00000143928 N/A N/A N/A N/A N/A N/A N/A N/A 0.536±0.06 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NT CIL_0003NT_0002 CGP 15:79995900-80091868
CIL_0000CB CIL_0000CB_0002 CGP 15:80077794-80119501
CIL_0000A3 CIL_0000A3_0002 CGP 15:80091334-80161701

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006605 ISO protein targeting
GO:0008021 ISO synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0030672 IEA synaptic vesicle membrane
GO:0048169 IMP regulation of long-term neuronal synaptic plasticity
GO:0048172 IMP regulation of short-term neuronal synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002564 syngr1a synaptogyrin 1a protein_coding Danio_rerio
ENSDARG00000023209 syngr1b synaptogyrin 1b protein_coding Danio_rerio
ENSG00000100321 SYNGR1 synaptogyrin 1 protein_coding Homo_sapiens

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