C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cell growth regulator with ring finger domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100532 CGRRF1 9606 + 14:54509812-54539309 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216420 CGRRF1-001 54509828-54539309 protein_coding
  ENST00000554791 CGRRF1-009 54509812-54538281 nonsense_mediated_decay
  ENST00000556172 CGRRF1-005 54537722-54538614 protein_coding
  ENST00000556216 CGRRF1-002 54509902-54538616 retained_intron
  ENST00000557184 CGRRF1-008 54510185-54531117 processed_transcript
  ENST00000557317 CGRRF1-004 54509906-54530998 protein_coding
  ENST00000557429 CGRRF1-003 54536073-54538614 retained_intron
  ENST00000557512 CGRRF1-007 54510126-54538247 processed_transcript
  ENST00000557755 CGRRF1-006 54509912-54538098 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216420ENST00000554791ENST00000556172ENST00000556216ENST00000557429ENST00000557512ENST00000557755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216420 0.538±0.00 1.051±0.00 N/A 2.680±0.75 0.589±0.24 1.023±0.45 0.852±0.27 1.778±1.65 2.015±1.39 1.013±0.00 1.336±0.00 1.973±1.08 0.896±0.37 3.174±0.00
ENST00000554791 1.662±0.00 N/A N/A 4.837±0.00 N/A 2.464±0.00 1.435±0.52 N/A 0.782±0.00 1.661±0.00 N/A 2.778±0.00 4.258±0.00 13.460±5.22
ENST00000556172 2.209±0.00 4.113±0.00 N/A 4.917±2.20 2.881±1.51 3.755±0.00 2.143±0.00 5.695±0.00 1.056±0.00 2.641±0.16 4.199±0.00 3.006±2.41 2.138±0.73 10.816±3.98
ENST00000556216 N/A N/A 0.129±0.00 N/A N/A 0.391±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557429 N/A 0.418±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A N/A
ENST00000557512 2.180±0.00 3.818±0.00 N/A 6.122±0.00 2.794±0.00 2.863±0.00 1.204±0.00 3.908±0.00 0.557±0.00 1.109±0.00 5.198±0.00 4.236±0.00 2.048±0.82 7.324±1.90
ENST00000557755 N/A N/A 0.392±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KQ CIL_0008KQ_0001 VISTA 14:53920865-54521777
CIL_00090Z CIL_00090Z_0001 VISTA 14:53923660-54524764
CIL_0000HK CIL_0000HK_0001 CGP 14:54474484-54539309
CIL_0004OT CIL_0004OT_0001 CGP 14:54509812-54793315

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006950 TAS response to stress
GO:0007050 IEA cell cycle arrest
GO:0008270 IEA zinc ion binding
GO:0008285 TAS negative regulation of cell proliferation
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037040 cgrrf1 cell growth regulator with ring finger domain 1 protein_coding Danio_rerio
ENSMUSG00000055128 Cgrrf1 cell growth regulator with ring finger domain 1 protein_coding Mus_musculus

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